Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

26110812 .. 26115862

Gene Structure 5051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTTTTGGATCAGAGACTTCGAGAAAGAAGGAAGATCCCAGTGGACACGAAACTCAGCGAACTAAATCACTGAGGCACTTGTTGGCTCAGACGTCCTCAATCAGCGGATCCATGGGTTTTGGATGTTTGGGTCTACGGTGGTGGGCGAGGTCAGGCAGGCAGGGGAGCGCTGGTCCTGGGGATCTGACGTTGGTGGTGGAGAGGCAGGAGTGGTGGGGAAGCGACGGTGCAGGAGCAGTTGGTGACGTGATTTGCCGGTGGGGCTCGTTTTGCAGACGACGGCCTTGGTGGAGTGCAGTGCTGCCTTGGTGGATCGCGGCGCTGAGTTTTGGTGTGGATTGGTGGTTGGGCCGGGACCACACCTGCTTCTCCGCTGCCACAGACTCCGACTTCCACGTCTACACCTGCGACCCCTTCCGCCGATGCCACTGCGACCCCTCCGATCCACGACACGGCGTCAGATTCGTCCAAATGCTCTTCCACTGCTACTACTTCGTCATCCTCAACGGCGAACCCGACCCGTTCTGCCCGCCCAACAAGGTCACGATCTATGACAACCGTCAGTCCCACTGCCTTAGCGAGCTATTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

199

Amino Acids

22.57

Weight (kDa)

8.07

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	374, 416
AasI	GACNNNNNNGTC	1 cut(s)	398
AatII	GACGTC	1 cut(s)	98
Acc36I	ACCTGC	2 cut(s)	374, 416
AccI	GTMKAC	2 cut(s)	136, 402
AccII	CGCG	1 cut(s)	320
AciI	CCGC	5 cut(s)	108, 320, 375, 421, 533
AclWI	GGATC	7 cut(s)	19, 32, 105, 118, 192, 323, 440
AcyI	GRCGYC	2 cut(s)	95, 459
AfeI	AGCGCT	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	455
AhdI	GACNNNNNGTC	1 cut(s)	458
AjiI	CACGTC	2 cut(s)	250, 400
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	586
AluI	AGCT	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	7 cut(s)	19, 32, 105, 118, 192, 323, 440
Aor51HI	AGCGCT	1 cut(s)	172
AoxI	GGCC	2 cut(s)	284, 352
ApeKI	GCWGC	2 cut(s)	304, 377
AspLEI	GCGC	2 cut(s)	173, 325
AspS9I	GGNCC	3 cut(s)	176, 352, 358
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	176, 358
BamHI	GGATCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	291, 364
BceAI	ACGGC	3 cut(s)	299, 472, 526
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	174, 326
BfuAI	ACCTGC	2 cut(s)	374, 416
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	3 cut(s)	305, 321, 378
BlsI	GCNGC	3 cut(s)	306, 322, 379
Bme1390I	CCNGG	2 cut(s)	180, 356
Bme18I	GGWCC	2 cut(s)	176, 358
BmeRI	GACNNNNNGTC	1 cut(s)	458
BmgBI	CACGTC	2 cut(s)	250, 400
BmgT120I	GGNCC	3 cut(s)	176, 352, 358
BmiI	GGNNCC	2 cut(s)	112, 359
BmrFI	CCNGG	2 cut(s)	180, 356
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	36
BoxI	GACNNNNGTC	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	95, 459
BsaJI	CCNNGG	4 cut(s)	114, 179, 287, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	114, 179, 287, 308
BseGI	GGATG	2 cut(s)	131, 501
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	4 cut(s)	65, 71, 104, 317
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	291, 364
BsgI	GTGCAG	2 cut(s)	252, 318
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	286, 354
BsiSI	CCGG	2 cut(s)	259, 355
BslFI	GGGAC	2 cut(s)	371, 553
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	371, 553
BsnI	GGCC	2 cut(s)	286, 354
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	5 cut(s)	108, 320, 375, 421, 533
BspANI	GGCC	2 cut(s)	286, 354
BspCNI	CTCAG	4 cut(s)	66, 70, 103, 318
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	112, 359
BspMI	ACCTGC	2 cut(s)	374, 416
BspPI	GGATC	7 cut(s)	19, 32, 105, 118, 192, 323, 440
BspQI	GCTCTTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	4 cut(s)	114, 179, 287, 308
BssMI	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
BssNI	GRCGYC	2 cut(s)	95, 459
BssT1I	CCWWGG	3 cut(s)	114, 287, 308
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	141, 230, 563
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	2 cut(s)	95, 459
BstC8I	GCNNGC	3 cut(s)	161, 533, 584
BstDEI	CTNAG	5 cut(s)	57, 74, 90, 326, 578
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	131, 501
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	174, 326
BstHHI	GCGC	2 cut(s)	173, 325
BstKTI	GATC	7 cut(s)	14, 40, 113, 187, 318, 448, 552
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 273
BstNI	CCWGG	1 cut(s)	180
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	178, 354
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	291, 364
BstX2I	RGATCY	3 cut(s)	37, 110, 184
BstYI	RGATCY	3 cut(s)	37, 110, 184
BsuRI	GGCC	2 cut(s)	286, 354
BtgI	CCRYGG	1 cut(s)	114
BtrI	CACGTC	2 cut(s)	250, 400
BtsCI	GGATG	2 cut(s)	131, 501
BtsI	GCAGTG	4 cut(s)	306, 430, 484, 571
BtsIMutI	CAGTG	6 cut(s)	49, 71, 306, 430, 484, 571
BveI	ACCTGC	2 cut(s)	374, 416
Cac8I	GCNNGC	3 cut(s)	161, 533, 584
CfoI	GCGC	2 cut(s)	173, 325
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	176, 352, 358
CseI	GACGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	5 cut(s)	89, 267, 286, 354, 586
CviKI_1	RGCY	5 cut(s)	89, 267, 286, 354, 586
DdeI	CTNAG	5 cut(s)	57, 74, 90, 326, 578
DpnI	GATC	7 cut(s)	13, 39, 112, 186, 317, 447, 551
DpnII	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
DrdI	GACNNNNNNGTC	1 cut(s)	398
DriI	GACNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	485
Eam1105I	GACNNNNNGTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	410
Eco130I	CCWWGG	3 cut(s)	114, 287, 308
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	176, 358
Eco47III	AGCGCT	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	114, 287, 308
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	3 cut(s)	114, 287, 308
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 555
FaqI	GGGAC	2 cut(s)	371, 553
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	540
FblI	GTMKAC	2 cut(s)	136, 402
Fnu4HI	GCNGC	3 cut(s)	305, 321, 378
FokI	GGATG	2 cut(s)	138, 488
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	305, 321, 378
GlaI	GCGC	2 cut(s)	172, 324
GluI	GCNGC	3 cut(s)	305, 321, 378
HaeII	RGCGCY	2 cut(s)	174, 326
HaeIII	GGCC	2 cut(s)	286, 354
HapII	CCGG	2 cut(s)	259, 355
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	2 cut(s)	173, 325
Hin1I	GRCGYC	2 cut(s)	95, 459
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	2 cut(s)	171, 323
HinP1I	GCGC	2 cut(s)	171, 323
HinfI	GANTC	2 cut(s)	386, 465
HpaII	CCGG	2 cut(s)	259, 355
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	47, 137, 403
Hpy188I	TCNGA	7 cut(s)	16, 93, 189, 391, 445, 464, 593
Hpy188III	TCNNGA	2 cut(s)	24, 547
Hpy8I	GTNNAC	3 cut(s)	47, 137, 403
Hpy99I	CGWCG	2 cut(s)	230, 285
HpyAV	CCTTC	2 cut(s)	25, 427
HpyCH4III	ACNGT	3 cut(s)	141, 230, 563
HpyCH4IV	ACGT	4 cut(s)	95, 191, 249, 399
HpyCH4V	TGCA	3 cut(s)	233, 276, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 273
HpyF3I	CTNAG	5 cut(s)	57, 74, 90, 326, 578
HpySE526I	ACGT	4 cut(s)	95, 191, 249, 399
Hsp92I	GRCGYC	2 cut(s)	95, 459
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	2 cut(s)	171, 323
Kzo9I	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	2 cut(s)	168, 236
Lsp1109I	GCAGC	2 cut(s)	291, 364
LweI	GCATC	1 cut(s)	416
MaeII	ACGT	4 cut(s)	95, 191, 249, 399
MaeIII	GTNAC	2 cut(s)	245, 544
MalI	GATC	7 cut(s)	13, 39, 112, 186, 317, 447, 551
MboI	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
MboII	GAAGA	2 cut(s)	47, 472
MflI	RGATCY	3 cut(s)	37, 110, 184
MhlI	GDGCHC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	69, 109, 144, 198, 451, 515
MspA1I	CMGCKG	2 cut(s)	108, 377
MspI	CCGG	2 cut(s)	259, 355
MspR9I	CCNGG	2 cut(s)	180, 356
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	264, 273
NciI	CCSGG	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	112, 359
NmuCI	GTSAC	2 cut(s)	245, 544
PaqCI	CACCTGC	2 cut(s)	374, 416
PciSI	GCTCTTC	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	306, 322, 379
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PshAI	GACNNNNGTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	112, 359
PspPI	GGNCC	3 cut(s)	176, 352, 358
PsuI	RGATCY	3 cut(s)	37, 110, 184
SapI	GCTCTTC	1 cut(s)	485
SatI	GCNGC	3 cut(s)	305, 321, 378
Sau3AI	GATC	7 cut(s)	11, 37, 110, 184, 315, 445, 549
Sau96I	GGNCC	3 cut(s)	176, 352, 358
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	180, 356
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	9 cut(s)	98, 155, 194, 252, 368, 402, 410, 546, 588
SfaNI	GCATC	1 cut(s)	416
SinI	GGWCC	2 cut(s)	176, 358
SsiI	CCGC	5 cut(s)	108, 320, 375, 421, 533
StyD4I	CCNGG	2 cut(s)	178, 354
StyI	CCWWGG	3 cut(s)	114, 287, 308
TaaI	ACNGT	3 cut(s)	141, 230, 563
TaiI	ACGT	4 cut(s)	98, 194, 252, 402
TaqI	TCGA	1 cut(s)	23
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	465
TscAI	CASTG	6 cut(s)	49, 78, 306, 437, 491, 578
TseFI	GTSAC	2 cut(s)	245, 544
TseI	GCWGC	2 cut(s)	304, 377
Tsp45I	GTSAC	2 cut(s)	245, 544
TspRI	CASTG	6 cut(s)	49, 78, 306, 437, 491, 578
VpaK11BI	GGWCC	2 cut(s)	176, 358
XmiI	GTMKAC	2 cut(s)	136, 402
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.