Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

72951774 .. 72952246

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATTTGAAAGATACTGTTTTTGAGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAGAACCTTACTACTGCCTACACATTTGCATGAGAGGTTAGGGTTAATCAAAAATGCAAAAGTTAGATTGCAACATAAACGAATAACTCCATCTATTGATGTAATTTTTTTTTTTTTGGTTATCATCAGAAAGCAATTACTTTTTCAACTAAAGTATATGAACATGCTGATGCCAGCAATGTTTATTTCTTTAATTACACTTTGTTTTCAGAGGATTGCAGAAAGTCTGAATATGTCCAAAAAGAAAGTTAGGAAGTTACTCAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

108

Amino Acids

12.77

Weight (kDa)

10.62

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	10, 36, 50, 203
Alw21I	GWGCWC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	43
BccI	CCATC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	86, 220
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	317
FaeI	CATG	2 cut(s)	89, 223
FaiI	YATR	6 cut(s)	87, 132, 213, 215, 221, 290
FatI	CATG	2 cut(s)	85, 219
Hin1II	CATG	2 cut(s)	89, 223
Hpy188I	TCNGA	3 cut(s)	185, 267, 285
Hpy188III	TCNNGA	2 cut(s)	36, 57
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	85, 113, 127, 275
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	89, 223
LpnPI	CCDG	4 cut(s)	29, 70, 243, 304
LweI	GCATC	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	52, 159, 191, 249
MnlI	CCTC	3 cut(s)	19, 84, 261
MseI	TTAA	2 cut(s)	101, 248
MslI	CAYNNNNRTG	2 cut(s)	84, 224
NlaIII	CATG	2 cut(s)	89, 223
NspI	RCATGY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	84, 224
SaqAI	TTAA	2 cut(s)	101, 248
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	65, 95, 323
SfaNI	GCATC	1 cut(s)	216
SgeI	CNNG	6 cut(s)	48, 56, 69, 98, 232, 242
SmiMI	CAYNNNNRTG	2 cut(s)	84, 224
Sse9I	AATT	4 cut(s)	52, 159, 191, 249
TaaI	ACNGT	1 cut(s)	19
TasI	AATT	4 cut(s)	52, 159, 191, 249
Tru1I	TTAA	2 cut(s)	101, 248
Tru9I	TTAA	2 cut(s)	101, 248
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.