Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

509789 .. 511087

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGATAACGAAGACGATACTAAGTCGTCCACAAAATCATCCACAAAACCATCATCTAAAGATGCTGAAGACGCTTCCAAGACATCTACGAAGCCATTATCCAAAGGCACTGATTCGGATGCTGGAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCGGATGCTGCAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAACCGTCATCCAAAGGTGCTGATTTAGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCACCATCCAAAGGTGCCGCTTCGGATGCTGAAAACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCATCCAAAAGTGCCGATTCGGATGCTGAAGACGCAACCAAGGCGTCTACAAAGTCATCGACAAAACCATCATCTAAAGGTGCTGATTCGGATAATGAAGACGCATCCAAGAAGTCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCATCATCCAAAGGTGCTGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAGGGTGCTAAAGATGCCGCAAAGTCAACAGCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCCGACAAAGTCGAAATCAGCGAGAGAAAAGCAGGCAAGTCGTCAGGAGGGGCCAACTCTGATAATAAGGAAGAGGTGCCATCGACTAAAGAGATCATGAGTAGCGCGAAGTTGGTGGCGTCGGCAGCGCAGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAATCTTCTCGGCGCGGCCAATCACTACGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATCTGGATAAGGCTGAGGATATGCTCCGTAAGATGGCCAAGAAATCTGATTCTGAGTCCGACACTGGTGACGATAAGACTAAGAAGTCTGGCGCTGGTGACAGTAAGACAAAGAAGTCTAGCGCCGGTGACAGTAAGACTAAGAAGTCTGGTGCTAGTGATGGTGAAGGTGATGAGGACAAGCCGAAGAAAAAATCAGAGAAGAAGCCAGTTGCCAAAGATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCGAAAGGTTTCTTGAAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

43.48

Weight (kDa)

9.1

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	6 cut(s)	232, 301, 439, 1090, 1120, 1150
AatII	GACGTC	2 cut(s)	143, 350
AccB1I	GGYRCC	3 cut(s)	245, 383, 850
AccI	GTMKAC	4 cut(s)	143, 350, 488, 557
AccII	CGCG	2 cut(s)	881, 962
AciI	CCGC	5 cut(s)	387, 729, 759, 935, 962
AcoI	YGGCCR	2 cut(s)	963, 1041
AcuI	CTGAAG	3 cut(s)	87, 351, 489
AcyI	GRCGYC	4 cut(s)	140, 347, 485, 893
AfiI	CCNNNNNNNGG	2 cut(s)	380, 1039
AgsI	TTSAA	2 cut(s)	1270, 1291
AluBI	AGCT	1 cut(s)	982
AluI	AGCT	1 cut(s)	982
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	4 cut(s)	825, 924, 963, 1041
ApeKI	GCWGC	3 cut(s)	260, 899, 941
Asp700I	GAANNNNTTC	1 cut(s)	1283
AspLEI	GCGC	5 cut(s)	881, 904, 962, 1100, 1130
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	5 cut(s)	1085, 1115, 1145, 1181, 1187
BalI	TGGCCA	1 cut(s)	1043
BanI	GGYRCC	3 cut(s)	245, 383, 850
BbsI	GAAGAC	6 cut(s)	18, 75, 201, 339, 477, 546
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	3 cut(s)	247, 911, 928
BceAI	ACGGC	4 cut(s)	217, 424, 688, 991
BcgI	CGANNNNNNTGC	8 cut(s)	239, 273, 446, 480, 795, 829, 937, 971
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	1125, 1161
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	2 cut(s)	1101, 1131
BisI	GCNGC	6 cut(s)	261, 387, 729, 900, 942, 963
BlsI	GCNGC	6 cut(s)	262, 388, 730, 901, 943, 964
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	4 cut(s)	247, 385, 826, 852
BpiI	GAAGAC	6 cut(s)	18, 75, 201, 339, 477, 546
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	1004
BsaHI	GRCGYC	4 cut(s)	140, 347, 485, 893
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 1039
Bse118I	RCCGGY	1 cut(s)	1130
Bse1I	ACTGG	2 cut(s)	1075, 1214
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	380, 1039
BseMII	CTCAG	3 cut(s)	725, 1011, 1050
BseNI	ACTGG	2 cut(s)	1075, 1214
BseXI	GCAGC	3 cut(s)	247, 911, 928
Bsh1236I	CGCG	2 cut(s)	881, 962
BshFI	GGCC	4 cut(s)	827, 926, 965, 1043
BshNI	GGYRCC	3 cut(s)	245, 383, 850
BsiSI	CCGG	2 cut(s)	756, 1131
BslI	CCNNNNNNNGG	2 cut(s)	380, 1039
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	827, 926, 965, 1043
Bsp143I	GATC	1 cut(s)	867
BspACI	CCGC	5 cut(s)	387, 729, 759, 935, 962
BspANI	GGCC	4 cut(s)	827, 926, 965, 1043
BspCNI	CTCAG	3 cut(s)	724, 1012, 1051
BspFNI	CGCG	2 cut(s)	881, 962
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	4 cut(s)	247, 385, 826, 852
BspMAI	CTGCAG	1 cut(s)	265
BspT107I	GGYRCC	3 cut(s)	245, 383, 850
BsrFI	RCCGGY	1 cut(s)	1130
BsrI	ACTGG	2 cut(s)	1075, 1214
BssAI	RCCGGY	1 cut(s)	1130
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	1 cut(s)	867
BssNI	GRCGYC	4 cut(s)	140, 347, 485, 893
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	303, 1109, 1139
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	4 cut(s)	140, 347, 485, 893
BstC8I	GCNNGC	3 cut(s)	808, 946, 980
BstDEI	CTNAG	6 cut(s)	21, 711, 1020, 1059, 1086, 1146
BstFNI	CGCG	2 cut(s)	881, 962
BstH2I	RGCGCY	2 cut(s)	1101, 1131
BstHHI	GCGC	5 cut(s)	881, 904, 962, 1100, 1130
BstKTI	GATC	1 cut(s)	870
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	867
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	881, 962
BstV1I	GCAGC	3 cut(s)	247, 911, 928
BstV2I	GAAGAC	6 cut(s)	18, 75, 201, 339, 477, 546
BsuRI	GGCC	4 cut(s)	827, 926, 965, 1043
BtsIMutI	CAGTG	2 cut(s)	108, 1068
Cac8I	GCNNGC	3 cut(s)	808, 946, 980
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	5 cut(s)	881, 904, 962, 1100, 1130
Cfr10I	RCCGGY	1 cut(s)	1130
Cfr13I	GGNCC	1 cut(s)	825
CseI	GACGC	9 cut(s)	80, 137, 206, 275, 344, 474, 482, 551, 882
CviAII	CATG	1 cut(s)	871
DdeI	CTNAG	6 cut(s)	21, 711, 1020, 1059, 1086, 1146
DpnI	GATC	1 cut(s)	869
DpnII	GATC	1 cut(s)	867
DrdI	GACNNNNNNGTC	6 cut(s)	232, 301, 439, 1090, 1120, 1150
DseDI	GACNNNNNNGTC	6 cut(s)	232, 301, 439, 1090, 1120, 1150
EaeI	YGGCCR	2 cut(s)	963, 1041
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco130I	CCWWGG	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	1264
Eco57I	CTGAAG	3 cut(s)	87, 351, 489
EcoRV	GATATC	1 cut(s)	1264
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	1 cut(s)	874
FaiI	YATR	2 cut(s)	872, 1028
FatI	CATG	1 cut(s)	870
FauI	CCCGC	1 cut(s)	928
FblI	GTMKAC	4 cut(s)	143, 350, 488, 557
Fnu4HI	GCNGC	6 cut(s)	261, 387, 729, 900, 942, 963
Fsp4HI	GCNGC	6 cut(s)	261, 387, 729, 900, 942, 963
FspBI	CTAG	2 cut(s)	1125, 1161
GlaI	GCGC	5 cut(s)	880, 903, 961, 1099, 1129
GluI	GCNGC	6 cut(s)	261, 387, 729, 900, 942, 963
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	1101, 1131
HaeIII	GGCC	4 cut(s)	827, 926, 965, 1043
HapII	CCGG	2 cut(s)	756, 1131
HgaI	GACGC	9 cut(s)	80, 137, 206, 275, 344, 474, 482, 551, 882
HhaI	GCGC	5 cut(s)	881, 904, 962, 1100, 1130
Hin1I	GRCGYC	4 cut(s)	140, 347, 485, 893
Hin1II	CATG	1 cut(s)	874
Hin6I	GCGC	5 cut(s)	879, 902, 960, 1098, 1128
HinP1I	GCGC	5 cut(s)	879, 902, 960, 1098, 1128
HincII	GTYRAC	2 cut(s)	237, 738
HindII	GTYRAC	2 cut(s)	237, 738
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	7 cut(s)	113, 251, 458, 527, 773, 1055, 1061
HpaII	CCGG	2 cut(s)	756, 1131
HphI	GGTGA	5 cut(s)	1085, 1115, 1145, 1181, 1187
Hpy166II	GTNNAC	7 cut(s)	30, 144, 237, 351, 489, 558, 738
Hpy188III	TCNNGA	5 cut(s)	819, 871, 1010, 1267, 1288
Hpy8I	GTNNAC	7 cut(s)	30, 144, 237, 351, 489, 558, 738
Hpy99I	CGWCG	1 cut(s)	898
HpyAV	CCTTC	4 cut(s)	916, 1166, 1232, 1285
HpyCH4III	ACNGT	3 cut(s)	303, 1109, 1139
HpyCH4IV	ACGT	2 cut(s)	140, 347
HpyCH4V	TGCA	1 cut(s)	263
HpyF3I	CTNAG	6 cut(s)	21, 711, 1020, 1059, 1086, 1146
HpySE526I	ACGT	2 cut(s)	140, 347
Hsp92I	GRCGYC	4 cut(s)	140, 347, 485, 893
Hsp92II	CATG	1 cut(s)	874
HspAI	GCGC	5 cut(s)	879, 902, 960, 1098, 1128
Kzo9I	GATC	1 cut(s)	867
LmnI	GCTCC	1 cut(s)	1035
Lsp1109I	GCAGC	3 cut(s)	247, 911, 928
MaeI	CTAG	2 cut(s)	1125, 1161
MaeII	ACGT	2 cut(s)	140, 347
MaeIII	GTNAC	3 cut(s)	1073, 1103, 1133
MalI	GATC	1 cut(s)	869
MboI	GATC	1 cut(s)	867
MlsI	TGGCCA	1 cut(s)	1043
MluNI	TGGCCA	1 cut(s)	1043
MlyI	GAGTC	2 cut(s)	782, 1070
MmeI	TCCRAC	2 cut(s)	801, 1089
MnlI	CCTC	8 cut(s)	220, 289, 427, 815, 841, 1015, 1174, 1225
Mox20I	TGGCCA	1 cut(s)	1043
MroXI	GAANNNNTTC	1 cut(s)	1283
MscI	TGGCCA	1 cut(s)	1043
Msp20I	TGGCCA	1 cut(s)	1043
MspI	CCGG	2 cut(s)	756, 1131
MvnI	CGCG	2 cut(s)	881, 962
NdeII	GATC	1 cut(s)	867
NlaIII	CATG	1 cut(s)	874
NlaIV	GGNNCC	4 cut(s)	247, 385, 826, 852
NmeAIII	GCCGAG	2 cut(s)	936, 952
NmuCI	GTSAC	3 cut(s)	1073, 1103, 1133
PagI	TCATGA	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	4 cut(s)	230, 299, 437, 792
PdmI	GAANNNNTTC	1 cut(s)	1283
PfeI	GAWTC	5 cut(s)	113, 251, 458, 527, 1055
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	6 cut(s)	262, 388, 730, 901, 943, 964
PleI	GAGTC	2 cut(s)	781, 1069
PpsI	GAGTC	2 cut(s)	781, 1069
PspN4I	GGNNCC	4 cut(s)	247, 385, 826, 852
PspPI	GGNCC	1 cut(s)	825
PstI	CTGCAG	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	782
SatI	GCNGC	6 cut(s)	261, 387, 729, 900, 942, 963
Sau3AI	GATC	1 cut(s)	867
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	2 cut(s)	782, 1070
SfcI	CTRYAG	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	1130
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
SsiI	CCGC	5 cut(s)	387, 729, 759, 935, 962
SspMI	CTAG	2 cut(s)	1125, 1161
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	303, 1109, 1139
TaiI	ACGT	2 cut(s)	143, 350
TaqI	TCGA	9 cut(s)	155, 224, 293, 362, 431, 500, 569, 786, 857
TauI	GCSGC	3 cut(s)	389, 731, 965
TfiI	GAWTC	5 cut(s)	113, 251, 458, 527, 1055
TscAI	CASTG	2 cut(s)	115, 1075
TseFI	GTSAC	3 cut(s)	1073, 1103, 1133
TseI	GCWGC	3 cut(s)	260, 899, 941
Tsp45I	GTSAC	3 cut(s)	1073, 1103, 1133
TspDTI	ATGAA	4 cut(s)	207, 552, 621, 684
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	2 cut(s)	115, 1075
Tth111I	GACNNNGTC	1 cut(s)	782
XmiI	GTMKAC	4 cut(s)	143, 350, 488, 557
XmnI	GAANNNNTTC	1 cut(s)	1283
XspI	CTAG	2 cut(s)	1125, 1161
ZraI	GACGTC	2 cut(s)	141, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.