Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

227497 .. 227886

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002245.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgaccaccctctctcctcctcctccgagtttcaatcctctaaaactcgctcccaaatccctcattccacccaaaccggcctccacctccgaacccgacccatccgttacagaaaccccaaccccaggtccaaacccgacacaatcccccaccaccctcctccacctcgctttcaaccaagaccacacctgcttctccgccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccacttccacagcgacccctccggtctacgcggcggcgttggattcgtccagatgctcttccactgccactacttcgccgtctttggcagcggaccagacccgttcttgccgcccaacaaggtcatgatctactacgatcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

129

Amino Acids

14.09

Weight (kDa)

6.56

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	197, 239
Acc36I	ACCTGC	2 cut(s)	197, 239
AccI	GTMKAC	2 cut(s)	225, 271
AccII	CGCG	2 cut(s)	222, 276
AciI	CCGC	8 cut(s)	198, 201, 220, 244, 276, 279, 336, 356
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	34, 175
AjnI	CCWGG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	128, 338
AvaII	GGWCC	2 cut(s)	128, 338
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	126
BfaI	CTAG	1 cut(s)	388
BfuAI	ACCTGC	2 cut(s)	197, 239
BisI	GCNGC	5 cut(s)	201, 277, 280, 334, 356
BlsI	GCNGC	5 cut(s)	202, 278, 281, 335, 357
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	128, 338
BmgT120I	GGNCC	2 cut(s)	128, 338
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseRI	GAGGAG	4 cut(s)	6, 9, 12, 149
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	2 cut(s)	222, 276
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	77, 213, 267
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	372, 382
BspACI	CCGC	8 cut(s)	198, 201, 220, 244, 276, 279, 336, 356
BspANI	GGCC	1 cut(s)	80
BspFNI	CGCG	2 cut(s)	222, 276
BspHI	TCATGA	1 cut(s)	369
BspMI	ACCTGC	2 cut(s)	197, 239
BspQI	GCTCTTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	372, 382
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	2 cut(s)	222, 276
BstKTI	GATC	2 cut(s)	375, 385
BstMBI	GATC	2 cut(s)	372, 382
BstMCI	CGRYCG	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	222, 276
BstV1I	GCAGC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	101
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	2 cut(s)	197, 239
CciI	TCATGA	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	128, 338
CseI	GACGC	1 cut(s)	211
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	2 cut(s)	80, 216
CviKI_1	RGCY	2 cut(s)	80, 216
DpnI	GATC	2 cut(s)	374, 384
DpnII	GATC	2 cut(s)	372, 382
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	2 cut(s)	187, 233
Eco47I	GGWCC	2 cut(s)	128, 338
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	373
FaiI	YATR	1 cut(s)	371
FatI	CATG	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	225, 271
Fnu4HI	GCNGC	5 cut(s)	201, 277, 280, 334, 356
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	5 cut(s)	201, 277, 280, 334, 356
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	5 cut(s)	201, 277, 280, 334, 356
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	77, 213, 267
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	2 cut(s)	209, 288
HpaII	CCGG	3 cut(s)	77, 213, 267
Hpy166II	GTNNAC	2 cut(s)	226, 272
Hpy188I	TCNGA	2 cut(s)	27, 91
Hpy188III	TCNNGA	2 cut(s)	295, 370
Hpy8I	GTNNAC	2 cut(s)	226, 272
HpyAV	CCTTC	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	372, 382
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	9 cut(s)	90, 111, 138, 202, 226, 244, 280, 308, 354
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	374, 384
MboI	GATC	2 cut(s)	372, 382
MboII	GAAGA	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	265
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	3 cut(s)	77, 213, 267
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	222, 276
NdeII	GATC	2 cut(s)	372, 382
NlaIII	CATG	1 cut(s)	373
PagI	TCATGA	1 cut(s)	369
PaqCI	CACCTGC	2 cut(s)	197, 239
PciSI	GCTCTTC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	5 cut(s)	202, 278, 281, 335, 357
Ple19I	CGATCG	1 cut(s)	385
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	128, 338
PvuI	CGATCG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	201, 277, 280, 334, 356
Sau3AI	GATC	2 cut(s)	372, 382
Sau96I	GGNCC	2 cut(s)	128, 338
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	6 cut(s)	89, 130, 168, 191, 233, 369
SfaNI	GCATC	1 cut(s)	288
SinI	GGWCC	2 cut(s)	128, 338
SsiI	CCGC	8 cut(s)	198, 201, 220, 244, 276, 279, 336, 356
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	124
TauI	GCSGC	4 cut(s)	203, 279, 282, 358
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	128, 338
XmiI	GTMKAC	2 cut(s)	225, 271
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.