RLG00000005591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000749
Physical Location & Seq
Forward (+)
131778 .. 133528
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005591

Sequence Viewer

Length: 537 bp
ATGATGGCTGCATCTAGATCTGGGGAGTGGCTGAGGAGTGAGTCTGGGCCAGCGTTGGATCGTGGTCGGATTGGGGAGGCGTCTGAGGCTGATCGGAAGGTGTGGCAGGATCTACGGTTTGGTGTTGCGGATCGATGGATTGTTGGTGCTCTGTTGTTGCTTGTCTTCGGATCCTTTCATAGATCCATGGGTTTTGGGTGTTTGGATCTACGAAGTTGTGCGAGAATAGGCTGGCGGGGGAGAGCTGGTGCTGCAGATCCGACACTGGTGGTAGAGAGGCAGGAGTGGTGTGGATGCGACGGTGCAGATGCGGTGGCTGTCAGGGATCTTCGGCGTGGTGTGATTTGCCGACAGGACACGATTTGCCGGCTACTTCTGGCGTCTCGACTAAGTTTGGCGTGCAGGCACCGCCGGTATCCTTGGTGGATTGTGGTCGCCGTCATCAGTTGGATTTCATATGCTAGTTGCAGTGTGATGACAGGACGACGATTCATATCCAATAGTGGCACATGGGAGGACTGCAAACCTTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.91

Weight (kDa)

9.35

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AciI CCGC 4 cut(s) 128, 235, 311, 409
AclWI GGATC 9 cut(s) 66, 117, 138, 165, 177, 178, 213, 251, 333
AcyI GRCGYC 2 cut(s) 80, 380
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 9 cut(s) 66, 117, 138, 165, 177, 178, 213, 251, 333
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 8, 251
AspS9I GGNCC 1 cut(s) 47
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 129
BceAI ACGGC 1 cut(s) 422
BciVI GTATCC 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 15, 462
BfmI CTRYAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 426
BglII AGATCT 1 cut(s) 17
BisI GCNGC 2 cut(s) 9, 252
BlsI GCNGC 2 cut(s) 10, 253
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 172, 407
BmsI GCATC 3 cut(s) 20, 284, 298
BpiI GAAGAC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 493
BsaHI GRCGYC 2 cut(s) 80, 380
BsaJI CCNNGG 2 cut(s) 186, 419
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bse118I RCCGGY 2 cut(s) 366, 411
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 186, 419
BseGI GGATG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 493
BseMII CTCAG 2 cut(s) 23, 75
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 2 cut(s) 324, 421
BshFI GGCC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 367, 412
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 4 cut(s) 128, 235, 311, 409
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 24, 76
BspDI ATCGAT 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 172, 407
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 9 cut(s) 66, 117, 138, 165, 177, 178, 213, 251, 333
BspT107I GGYRCC 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 366, 411
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 2 cut(s) 366, 411
BssECI CCNNGG 2 cut(s) 186, 419
BssNI GRCGYC 2 cut(s) 80, 380
BssT1I CCWWGG 2 cut(s) 186, 419
Bst4CI ACNGT 2 cut(s) 117, 302
BstACI GRCGYC 2 cut(s) 80, 380
BstC8I GCNNGC 5 cut(s) 51, 233, 368, 400, 404
BstDEI CTNAG 3 cut(s) 32, 84, 389
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 299
BstMAI GTCTC 1 cut(s) 387
BstMWI GCNNNNNNNGC 3 cut(s) 86, 251, 408
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 7 cut(s) 17, 109, 170, 182, 205, 256, 325
BstYI RGATCY 7 cut(s) 17, 109, 170, 182, 205, 256, 325
Bsu15I ATCGAT 1 cut(s) 133
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 49
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 263, 475
Cac8I GCNNGC 5 cut(s) 51, 233, 368, 400, 404
Cfr10I RCCGGY 2 cut(s) 366, 411
Cfr13I GGNCC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 133
CseI GACGC 2 cut(s) 69, 369
CviAII CATG 2 cut(s) 187, 510
CviJI RGCY 8 cut(s) 8, 31, 49, 89, 231, 245, 317, 370
CviKI_1 RGCY 8 cut(s) 8, 31, 49, 89, 231, 245, 317, 370
DdeI CTNAG 3 cut(s) 32, 84, 389
Eco130I CCWWGG 2 cut(s) 186, 419
EcoT14I CCWWGG 2 cut(s) 186, 419
ErhI CCWWGG 2 cut(s) 186, 419
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 2 cut(s) 190, 513
FaiI YATR 7 cut(s) 180, 188, 457, 459, 494, 511, 535
FatI CATG 2 cut(s) 186, 509
FauI CCCGC 1 cut(s) 228
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 9, 252
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 9, 252
FspBI CTAG 2 cut(s) 15, 462
GluI GCNGC 2 cut(s) 9, 252
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 367, 412
HgaI GACGC 2 cut(s) 69, 369
Hin1I GRCGYC 2 cut(s) 80, 380
Hin1II CATG 2 cut(s) 190, 513
HinfI GANTC 2 cut(s) 41, 489
HpaII CCGG 2 cut(s) 367, 412
Hpy188I TCNGA 5 cut(s) 69, 85, 96, 170, 261
Hpy188III TCNNGA 2 cut(s) 15, 384
Hpy99I CGWCG 2 cut(s) 302, 489
HpyAV CCTTC 2 cut(s) 91, 537
HpyCH4III ACNGT 2 cut(s) 117, 302
HpyCH4V TGCA 6 cut(s) 11, 254, 305, 402, 468, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 251, 408
HpyF3I CTNAG 3 cut(s) 32, 84, 389
Hsp92I GRCGYC 2 cut(s) 80, 380
Hsp92II CATG 2 cut(s) 190, 513
KroI GCCGGC 1 cut(s) 366
KroNI GCCGGC 1 cut(s) 368
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 3 cut(s) 20, 284, 298
MaeI CTAG 2 cut(s) 15, 462
MboII GAAGA 2 cut(s) 157, 320
MflI RGATCY 7 cut(s) 17, 109, 170, 182, 205, 256, 325
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 4 cut(s) 36, 47, 284, 428
MnlI CCTC 5 cut(s) 27, 70, 79, 270, 508
MroNI GCCGGC 1 cut(s) 366
MspI CCGG 2 cut(s) 367, 412
MwoI GCNNNNNNNGC 3 cut(s) 86, 251, 408
NaeI GCCGGC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 457
NgoMIV GCCGGC 1 cut(s) 366
NlaIII CATG 2 cut(s) 190, 513
NlaIV GGNNCC 2 cut(s) 172, 407
PdiI GCCGGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 489
PkrI GCNGC 2 cut(s) 10, 253
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 172, 407
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 7 cut(s) 17, 109, 170, 182, 205, 256, 325
SatI GCNGC 2 cut(s) 9, 252
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 102, 247, 529
SfaNI GCATC 3 cut(s) 20, 284, 298
SfcI CTRYAG 1 cut(s) 252
SsiI CCGC 4 cut(s) 128, 235, 311, 409
SspMI CTAG 2 cut(s) 15, 462
StyI CCWWGG 2 cut(s) 186, 419
TaaI ACNGT 2 cut(s) 117, 302
TaqI TCGA 2 cut(s) 133, 385
TfiI GAWTC 1 cut(s) 489
TscAI CASTG 2 cut(s) 270, 475
TseI GCWGC 2 cut(s) 8, 251
TspDTI ATGAA 4 cut(s) 167, 444, 481, 519
TspRI CASTG 2 cut(s) 270, 475
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 2 cut(s) 15, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.