Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

42860309 .. 42868987

Gene Structure 8679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGACGAAGGTGCGGTGGTAGCTGCATCTGGATCTGTGGCGTGGCTGAGGTTTGAGTCCGGTCCAGCATTGGATCTTAGTAAGATTGGGGAGGTGTCTTGTGTCGGTCGAAAAGTGTGGCGGGATCTACTGTTTGCTGCTGCGGATCGGTGGATCGACGGTGGTCTTTTGTTGTTTGATTTCAGTTTCTGTCGTAGATCCATAGGTTTTGGATGTTTGGGTCTACGGTGGTCTGTGAGGTCCGACAGGCGGGGGAGCGCTGGTACTGGGGATCTGAAGTTGGTGGTGGAGCAGCAGGAGTGGTGGGGAAGCGACGATGCAGTCTCAGCTGAGAAAAACCTAAAGAATCGCTCGGAATCGGAGGAGATGGCGAGCGCGGTGGACGCAGCAGGAGATCCGATCCCGACGTCGGCGGTGCTGACGGCGGCGGCGAAGCACATTCAGTTCAGATGCCAAGAGGAGAACGTGGCCTTCCTCAAGTGCAAGAAGAAGGACCCCAATCCCGAGAAGTGTCTCGACCAAGGTCGCCAAGTCACTCGCTGCGTCCTCACCTTGCTGAAAGATCTTCATCAGAGGTGCACGAAAGAGATGGATGAGTACGTTGGATGCATGTATTACAATACAAATGAATTTGAATTATGTCGCAAAGAGCAGGAGGAATTCGAGAAAAAATGCCCATTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0009536 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

CHCH

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

5.34

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	193 - 225	6.7e-07	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	377
AciI	CCGC	8 cut(s)	14, 121, 143, 250, 377, 413, 425, 428
AclWI	GGATC	9 cut(s)	40, 81, 132, 153, 161, 192, 279, 389, 394
AcsI	RAATTY	2 cut(s)	629, 659
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	265, 599
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	249, 409
AgsI	TTSAA	1 cut(s)	635
AluBI	AGCT	2 cut(s)	23, 329
AluI	AGCT	2 cut(s)	23, 329
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	2 cut(s)	328, 518
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	9 cut(s)	40, 81, 132, 153, 161, 192, 279, 389, 394
AlwNI	CAGNNNCTG	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	503
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	1 cut(s)	468
ApaLI	GTGCAC	1 cut(s)	577
ApeKI	GCWGC	6 cut(s)	23, 137, 140, 292, 386, 540
ApoI	RAATTY	2 cut(s)	629, 659
AspLEI	GCGC	2 cut(s)	260, 377
AspS9I	GGNCC	3 cut(s)	62, 240, 493
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	3 cut(s)	62, 240, 493
BaeGI	GKGCMC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	581
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	6 cut(s)	10, 124, 127, 304, 398, 527
BccI	CCATC	2 cut(s)	361, 583
BceAI	ACGGC	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	328, 518
BfoI	RGCGCY	1 cut(s)	261
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	8 cut(s)	24, 138, 141, 293, 387, 426, 429, 541
BlsI	GCNGC	8 cut(s)	25, 139, 142, 294, 388, 427, 430, 542
Bme18I	GGWCC	3 cut(s)	62, 240, 493
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	62, 240, 493
BmiI	GGNNCC	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	4 cut(s)	35, 307, 440, 596
BmuI	ACTGGG	1 cut(s)	276
BoxI	GACNNNNGTC	2 cut(s)	162, 522
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 409
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	218, 598, 611
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	249, 409
BseMII	CTCAG	3 cut(s)	38, 321, 339
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	2 cut(s)	377, 473
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	6 cut(s)	10, 124, 127, 304, 398, 527
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	249, 409
BsmAI	GTCTC	2 cut(s)	328, 518
BsnI	GGCC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	581
BspACI	CCGC	8 cut(s)	14, 121, 143, 250, 377, 413, 425, 428
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	3 cut(s)	39, 322, 338
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	9 cut(s)	40, 81, 132, 153, 161, 192, 279, 389, 394
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	520
BssNI	GRCGYC	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	3 cut(s)	132, 161, 228
BstACI	GRCGYC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	47, 77, 325, 330
BstF5I	GGATG	3 cut(s)	218, 598, 611
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 377
BstMAI	GTCTC	2 cut(s)	328, 518
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 326, 383
BstNSI	RCATGY	1 cut(s)	613
BstPAI	GACNNNNGTC	2 cut(s)	162, 522
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	6 cut(s)	10, 124, 127, 304, 398, 527
BstX2I	RGATCY	7 cut(s)	32, 73, 124, 197, 271, 394, 562
BstYI	RGATCY	7 cut(s)	32, 73, 124, 197, 271, 394, 562
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	218, 598, 611
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	189
CfoI	GCGC	2 cut(s)	260, 377
Cfr13I	GGNCC	3 cut(s)	62, 240, 493
CseI	GACGC	2 cut(s)	392, 532
Csp6I	GTAC	2 cut(s)	264, 598
CviAII	CATG	1 cut(s)	610
CviJI	RGCY	4 cut(s)	23, 46, 329, 470
CviKI_1	RGCY	4 cut(s)	23, 46, 329, 470
CviQI	GTAC	2 cut(s)	264, 598
DdeI	CTNAG	4 cut(s)	47, 77, 325, 330
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	520
Eco47I	GGWCC	3 cut(s)	62, 240, 493
Eco47III	AGCGCT	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	1 cut(s)	613
FaiI	YATR	3 cut(s)	203, 611, 640
FatI	CATG	1 cut(s)	609
FauI	CCCGC	2 cut(s)	114, 243
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	8 cut(s)	24, 138, 141, 293, 387, 426, 429, 541
FokI	GGATG	3 cut(s)	225, 605, 618
Fsp4HI	GCNGC	8 cut(s)	24, 138, 141, 293, 387, 426, 429, 541
GlaI	GCGC	2 cut(s)	259, 376
GluI	GCNGC	8 cut(s)	24, 138, 141, 293, 387, 426, 429, 541
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	2 cut(s)	392, 532
HhaI	GCGC	2 cut(s)	260, 377
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	2 cut(s)	258, 375
HinP1I	GCGC	2 cut(s)	258, 375
HinfI	GANTC	3 cut(s)	56, 346, 356
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	3 cut(s)	224, 382, 579
Hpy188I	TCNGA	7 cut(s)	244, 276, 355, 361, 399, 449, 573
Hpy188III	TCNNGA	5 cut(s)	30, 403, 503, 515, 664
Hpy8I	GTNNAC	3 cut(s)	224, 382, 579
Hpy99I	CGWCG	4 cut(s)	161, 317, 409, 412
HpyAV	CCTTC	2 cut(s)	481, 484
HpyCH4III	ACNGT	3 cut(s)	132, 161, 228
HpyCH4IV	ACGT	3 cut(s)	407, 465, 600
HpyCH4V	TGCA	5 cut(s)	26, 320, 483, 579, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 326, 383
HpyF3I	CTNAG	4 cut(s)	47, 77, 325, 330
HpySE526I	ACGT	3 cut(s)	407, 465, 600
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	2 cut(s)	258, 375
LmnI	GCTCC	2 cut(s)	255, 289
LpnPI	CCDG	9 cut(s)	15, 73, 78, 232, 246, 252, 281, 375, 638
Lsp1109I	GCAGC	6 cut(s)	10, 124, 127, 304, 398, 527
LweI	GCATC	4 cut(s)	35, 307, 440, 596
MaeII	ACGT	3 cut(s)	407, 465, 600
MaeIII	GTNAC	1 cut(s)	532
MboII	GAAGA	2 cut(s)	499, 557
MflI	RGATCY	7 cut(s)	32, 73, 124, 197, 271, 394, 562
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	3 cut(s)	629, 635, 659
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	267, 583
MnlI	CCTC	9 cut(s)	42, 85, 231, 355, 451, 485, 557, 567, 649
Mph1103I	ATGCAT	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	682
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	20, 326, 383
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	346, 356
PkrI	GCNGC	8 cut(s)	25, 139, 142, 294, 388, 427, 430, 542
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	493
PshAI	GACNNNNGTC	2 cut(s)	162, 522
Psp5II	RGGWCCY	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	3 cut(s)	62, 240, 493
PspPPI	RGGWCCY	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	7 cut(s)	32, 73, 124, 197, 271, 394, 562
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	265, 599
RsaNI	GTAC	2 cut(s)	264, 598
RseI	CAYNNNNRTG	1 cut(s)	682
SatI	GCNGC	8 cut(s)	24, 138, 141, 293, 387, 426, 429, 541
Sau96I	GGNCC	3 cut(s)	62, 240, 493
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	4 cut(s)	35, 307, 440, 596
SinI	GGWCC	3 cut(s)	62, 240, 493
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	629, 635, 659
SsiI	CCGC	8 cut(s)	14, 121, 143, 250, 377, 413, 425, 428
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	132, 161, 228
TaiI	ACGT	3 cut(s)	410, 468, 603
TaqI	TCGA	4 cut(s)	109, 156, 516, 663
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	629, 635, 659
TauI	GCSGC	2 cut(s)	428, 431
TfiI	GAWTC	2 cut(s)	346, 356
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	6 cut(s)	23, 137, 140, 292, 386, 540
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	557, 642
VneI	GTGCAC	1 cut(s)	577
VpaK11BI	GGWCC	3 cut(s)	62, 240, 493
XapI	RAATTY	2 cut(s)	629, 659
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	223
ZraI	GACGTC	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.