Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

67238865 .. 67240742

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG364000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGATAACGAAGACGATACTAAGTCGTCCACAAAATCATCCACAAAATCATCATCTAAAGATGCTGAAGACACTTCCAAGACATCTACAAAGCCATTATCCAAAGGCACTGATTCGGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCGGATGCTGCAGACGCATCCAAGACCTCTACAAAGTCATCAACAAAACCGTCATCCAAAGGTGCCGATTTAGATGCTGAAGAAGCATCTAAGACGTCTACAAAGTCATCGACAAAACCACCATCCAAAGGTGCTGCTTCGGATGCTGAAGACGCAACCAAGACATCTACAAAGTCATCGACAAAACCATTATCCAAAGGTGCCGCTTTGGATGCTGAAAACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCATCCAAAAGTGCCGATTCGGAAGTTGAAGACGCATCCAAGGCGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGCTGATTCAGATAATGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGGTTCGGATAATGAAGATGGTCAAACCAAGACGTCCACAAAGTCATCGACAAAGCCATCATCCAAAGGTACTGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAGGGTGCTAAAGATGCCGCAAAGTCAACAGCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCAGACAAAGTCGAAATCAGCGAGAGAAAATCAGGCAAGTCCTCAGGAGGGGCCCACTCTGAGAATAAGGAAGAGGTGCCATCGACTAAAGAGATCATGAGCAGCGCGAAGTTGGTGGCGTCGGCAGCGCAGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAACCTTCTCGGCGCGGCCAATCACTACGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATTTGGATAAGGCTGAGGATATGCTCCGTAAGATGGCCAAGAAGTCTGATTCTGAGTCCGACACTGGTGACGATAAGACTAAGAAGTCTGGTGTTGGTGACAGTAAGACTAAGAAGTCTGGCGCCGGTGACAGTAAGACTAAGAAGTCCGGTGCTAGTGACGGTGAAGGTGATGAGGACAAGCCGAAAAAAAAATCAGAGAAGAAGCCAGCTGCCAAAAATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCTAAAGGTTTCTTGAAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

458

Amino Acids

46.26

Weight (kDa)

9.08

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	5 cut(s)	232, 508, 1168, 1198, 1228
AatII	GACGTC	4 cut(s)	143, 350, 626, 698
AccB1I	GGYRCC	5 cut(s)	245, 314, 452, 928, 1205
AccI	GTMKAC	4 cut(s)	143, 350, 557, 626
AccII	CGCG	2 cut(s)	959, 1040
AciI	CCGC	5 cut(s)	456, 807, 837, 1013, 1040
AcoI	YGGCCR	2 cut(s)	1041, 1119
AcuI	CTGAAG	4 cut(s)	87, 144, 351, 420
AcyI	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	3 cut(s)	380, 900, 1117
AgsI	TTSAA	3 cut(s)	539, 1348, 1369
AluBI	AGCT	2 cut(s)	1060, 1295
AluI	AGCT	2 cut(s)	1060, 1295
AoxI	GGCC	4 cut(s)	903, 1002, 1041, 1119
ApaI	GGGCCC	1 cut(s)	907
ApeKI	GCWGC	6 cut(s)	260, 386, 954, 977, 1019, 1295
AspLEI	GCGC	4 cut(s)	959, 982, 1040, 1208
AspS9I	GGNCC	2 cut(s)	903, 904
AsuHPI	GGTGA	5 cut(s)	1163, 1193, 1223, 1259, 1265
AxyI	CCTNAGG	1 cut(s)	895
BaeGI	GKGCMC	1 cut(s)	907
BalI	TGGCCA	1 cut(s)	1121
BanI	GGYRCC	5 cut(s)	245, 314, 452, 928, 1205
BanII	GRGCYC	1 cut(s)	907
BbsI	GAAGAC	7 cut(s)	18, 75, 132, 201, 408, 546, 615
BbvCI	CCTCAGC	1 cut(s)	1098
BbvI	GCAGC	6 cut(s)	247, 373, 966, 989, 1006, 1282
BccI	CCATC	9 cut(s)	172, 382, 586, 655, 674, 727, 940, 1111, 1345
BceAI	ACGGC	4 cut(s)	217, 493, 766, 1069
BcgI	CGANNNNNNTGC	6 cut(s)	239, 273, 308, 342, 1015, 1049
BfaI	CTAG	1 cut(s)	1239
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	1209
BisI	GCNGC	9 cut(s)	261, 387, 456, 807, 955, 978, 1020, 1041, 1296
BlsI	GCNGC	9 cut(s)	262, 388, 457, 808, 956, 979, 1021, 1042, 1297
BmgT120I	GGNCC	2 cut(s)	903, 904
BmiI	GGNNCC	7 cut(s)	247, 316, 454, 904, 905, 930, 1207
BpiI	GAAGAC	7 cut(s)	18, 75, 132, 201, 408, 546, 615
Bpu10I	CCTNAGC	1 cut(s)	1098
BpuEI	CTTGAG	1 cut(s)	1082
BsaHI	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	1232
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 900, 1117
Bse118I	RCCGGY	1 cut(s)	1208
Bse1I	ACTGG	2 cut(s)	739, 1153
Bse21I	CCTNAGG	1 cut(s)	895
BseDI	CCNNGG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	380, 900, 1117
BseMII	CTCAG	5 cut(s)	803, 903, 909, 1089, 1128
BseNI	ACTGG	2 cut(s)	739, 1153
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	6 cut(s)	247, 373, 966, 989, 1006, 1282
Bsh1236I	CGCG	2 cut(s)	959, 1040
BshFI	GGCC	4 cut(s)	905, 1004, 1043, 1121
BshNI	GGYRCC	5 cut(s)	245, 314, 452, 928, 1205
BsiSI	CCGG	3 cut(s)	834, 1209, 1233
BslI	CCNNNNNNNGG	3 cut(s)	380, 900, 1117
BsnI	GGCC	4 cut(s)	905, 1004, 1043, 1121
Bsp120I	GGGCCC	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp143I	GATC	1 cut(s)	945
BspACI	CCGC	5 cut(s)	456, 807, 837, 1013, 1040
BspANI	GGCC	4 cut(s)	905, 1004, 1043, 1121
BspCNI	CTCAG	5 cut(s)	802, 904, 908, 1090, 1129
BspFNI	CGCG	2 cut(s)	959, 1040
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	7 cut(s)	247, 316, 454, 904, 905, 930, 1207
BspMAI	CTGCAG	1 cut(s)	265
BspT107I	GGYRCC	5 cut(s)	245, 314, 452, 928, 1205
BsrFI	RCCGGY	1 cut(s)	1208
BsrI	ACTGG	2 cut(s)	739, 1153
BssAI	RCCGGY	1 cut(s)	1208
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	1 cut(s)	945
BssNI	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
BssT1I	CCWWGG	1 cut(s)	549
Bst4CI	ACNGT	4 cut(s)	303, 1187, 1217, 1247
Bst6I	CTCTTC	1 cut(s)	918
BstACI	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
BstC8I	GCNNGC	3 cut(s)	1024, 1058, 1293
BstFNI	CGCG	2 cut(s)	959, 1040
BstH2I	RGCGCY	1 cut(s)	1209
BstHHI	GCGC	4 cut(s)	959, 982, 1040, 1208
BstKTI	GATC	1 cut(s)	948
BstMBI	GATC	1 cut(s)	945
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	907
BstUI	CGCG	2 cut(s)	959, 1040
BstV1I	GCAGC	6 cut(s)	247, 373, 966, 989, 1006, 1282
BstV2I	GAAGAC	7 cut(s)	18, 75, 132, 201, 408, 546, 615
Bsu36I	CCTNAGG	1 cut(s)	895
BsuRI	GGCC	4 cut(s)	905, 1004, 1043, 1121
BtsIMutI	CAGTG	2 cut(s)	108, 1146
Cac8I	GCNNGC	3 cut(s)	1024, 1058, 1293
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	4 cut(s)	959, 982, 1040, 1208
Cfr10I	RCCGGY	1 cut(s)	1208
Cfr13I	GGNCC	2 cut(s)	903, 904
CseI	GACGC	8 cut(s)	137, 206, 275, 413, 543, 551, 620, 960
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	1 cut(s)	949
CviQI	GTAC	1 cut(s)	732
DinI	GGCGCC	1 cut(s)	1207
DpnI	GATC	1 cut(s)	947
DpnII	GATC	1 cut(s)	945
DrdI	GACNNNNNNGTC	5 cut(s)	232, 508, 1168, 1198, 1228
DseDI	GACNNNNNNGTC	5 cut(s)	232, 508, 1168, 1198, 1228
EaeI	YGGCCR	2 cut(s)	1041, 1119
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	907
Eco32I	GATATC	1 cut(s)	1342
Eco57I	CTGAAG	4 cut(s)	87, 144, 351, 420
Eco81I	CCTNAGG	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	903
EcoRV	GATATC	1 cut(s)	1342
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	907
EgeI	GGCGCC	1 cut(s)	1207
EheI	GGCGCC	1 cut(s)	1207
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	952
FaiI	YATR	2 cut(s)	950, 1106
FatI	CATG	1 cut(s)	948
FauI	CCCGC	1 cut(s)	1006
FblI	GTMKAC	4 cut(s)	143, 350, 557, 626
Fnu4HI	GCNGC	9 cut(s)	261, 387, 456, 807, 955, 978, 1020, 1041, 1296
FriOI	GRGCYC	1 cut(s)	907
Fsp4HI	GCNGC	9 cut(s)	261, 387, 456, 807, 955, 978, 1020, 1041, 1296
FspBI	CTAG	1 cut(s)	1239
GlaI	GCGC	4 cut(s)	958, 981, 1039, 1207
GluI	GCNGC	9 cut(s)	261, 387, 456, 807, 955, 978, 1020, 1041, 1296
HaeII	RGCGCY	1 cut(s)	1209
HaeIII	GGCC	4 cut(s)	905, 1004, 1043, 1121
HapII	CCGG	3 cut(s)	834, 1209, 1233
HgaI	GACGC	8 cut(s)	137, 206, 275, 413, 543, 551, 620, 960
HhaI	GCGC	4 cut(s)	959, 982, 1040, 1208
Hin1I	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
Hin1II	CATG	1 cut(s)	952
Hin6I	GCGC	4 cut(s)	957, 980, 1038, 1206
HinP1I	GCGC	4 cut(s)	957, 980, 1038, 1206
HincII	GTYRAC	2 cut(s)	237, 816
HindII	GTYRAC	2 cut(s)	237, 816
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	7 cut(s)	113, 251, 527, 596, 851, 1133, 1139
HpaII	CCGG	3 cut(s)	834, 1209, 1233
HphI	GGTGA	5 cut(s)	1163, 1193, 1223, 1259, 1265
Hpy166II	GTNNAC	8 cut(s)	30, 144, 237, 351, 558, 627, 699, 816
Hpy188III	TCNNGA	4 cut(s)	897, 949, 1345, 1366
Hpy8I	GTNNAC	8 cut(s)	30, 144, 237, 351, 558, 627, 699, 816
Hpy99I	CGWCG	1 cut(s)	976
HpyAV	CCTTC	5 cut(s)	994, 1040, 1244, 1310, 1363
HpyCH4III	ACNGT	4 cut(s)	303, 1187, 1217, 1247
HpyCH4IV	ACGT	4 cut(s)	140, 347, 623, 695
HpyCH4V	TGCA	1 cut(s)	263
HpySE526I	ACGT	4 cut(s)	140, 347, 623, 695
Hsp92I	GRCGYC	7 cut(s)	140, 347, 554, 623, 695, 971, 1206
Hsp92II	CATG	1 cut(s)	952
HspAI	GCGC	4 cut(s)	957, 980, 1038, 1206
KasI	GGCGCC	1 cut(s)	1205
Kzo9I	GATC	1 cut(s)	945
LmnI	GCTCC	1 cut(s)	1113
Lsp1109I	GCAGC	6 cut(s)	247, 373, 966, 989, 1006, 1282
MaeI	CTAG	1 cut(s)	1239
MaeII	ACGT	4 cut(s)	140, 347, 623, 695
MaeIII	GTNAC	4 cut(s)	1151, 1181, 1211, 1241
MalI	GATC	1 cut(s)	947
MboI	GATC	1 cut(s)	945
MhlI	GDGCHC	1 cut(s)	907
MlsI	TGGCCA	1 cut(s)	1121
MluNI	TGGCCA	1 cut(s)	1121
Mly113I	GGCGCC	1 cut(s)	1206
MlyI	GAGTC	2 cut(s)	860, 1148
MmeI	TCCRAC	1 cut(s)	1167
MnlI	CCTC	9 cut(s)	220, 289, 496, 893, 904, 919, 1093, 1252, 1303
Mox20I	TGGCCA	1 cut(s)	1121
MscI	TGGCCA	1 cut(s)	1121
Msp20I	TGGCCA	1 cut(s)	1121
MspA1I	CMGCKG	1 cut(s)	1295
MspI	CCGG	3 cut(s)	834, 1209, 1233
MvnI	CGCG	2 cut(s)	959, 1040
NarI	GGCGCC	1 cut(s)	1206
NdeII	GATC	1 cut(s)	945
NlaIII	CATG	1 cut(s)	952
NlaIV	GGNNCC	7 cut(s)	247, 316, 454, 904, 905, 930, 1207
NmeAIII	GCCGAG	2 cut(s)	1014, 1030
NmuCI	GTSAC	4 cut(s)	1151, 1181, 1211, 1241
PagI	TCATGA	1 cut(s)	948
PcsI	WCGNNNNNNNCGW	3 cut(s)	230, 506, 870
PfeI	GAWTC	5 cut(s)	113, 251, 527, 596, 1133
PflFI	GACNNNGTC	1 cut(s)	860
PkrI	GCNGC	9 cut(s)	262, 388, 457, 808, 956, 979, 1021, 1042, 1297
PleI	GAGTC	2 cut(s)	859, 1147
PluTI	GGCGCC	1 cut(s)	1209
PpsI	GAGTC	2 cut(s)	859, 1147
PspN4I	GGNNCC	7 cut(s)	247, 316, 454, 904, 905, 930, 1207
PspOMI	GGGCCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	903, 904
PstI	CTGCAG	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
SatI	GCNGC	9 cut(s)	261, 387, 456, 807, 955, 978, 1020, 1041, 1296
Sau3AI	GATC	1 cut(s)	945
Sau96I	GGNCC	2 cut(s)	903, 904
SchI	GAGTC	2 cut(s)	860, 1148
SduI	GDGCHC	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	1207
SgrAI	CRCCGGYG	1 cut(s)	1208
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
SsiI	CCGC	5 cut(s)	456, 807, 837, 1013, 1040
SspDI	GGCGCC	1 cut(s)	1205
SspMI	CTAG	1 cut(s)	1239
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	4 cut(s)	303, 1187, 1217, 1247
TaiI	ACGT	4 cut(s)	143, 350, 626, 698
TauI	GCSGC	3 cut(s)	458, 809, 1043
TfiI	GAWTC	5 cut(s)	113, 251, 527, 596, 1133
TscAI	CASTG	2 cut(s)	115, 1153
TseFI	GTSAC	4 cut(s)	1151, 1181, 1211, 1241
TseI	GCWGC	6 cut(s)	260, 386, 954, 977, 1019, 1295
Tsp45I	GTSAC	4 cut(s)	1151, 1181, 1211, 1241
TspDTI	ATGAA	4 cut(s)	207, 621, 690, 762
TspGWI	ACGGA	1 cut(s)	1100
TspRI	CASTG	2 cut(s)	115, 1153
Tth111I	GACNNNGTC	1 cut(s)	860
XmiI	GTMKAC	4 cut(s)	143, 350, 557, 626
XspI	CTAG	1 cut(s)	1239
ZraI	GACGTC	4 cut(s)	141, 348, 624, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.