Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

64024444 .. 64026293

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG389400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAAAACGAAGACGATGCTAAGTCGTCCACAAAATCATCCACAAAACCATCATCTAAAGATGCTGAAGACGCTTCCAAGACATCTACAAAGTCATCGACAAAGCCATTATCCAAAGGTACTGATTCGGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCAGATGTTGCAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAACCGTCATCCAAAGGTGCCAATTTAGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCACCACCCAAAGGTGCCGCTTCGGATGCTGAAGACGCATCTAAGACCTCTACAAAGTCATCGACAAAGCCGTCATCCAAAAGTGCCGATTCGGATGCTGAAGACGCATCCAAGGCATCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGCTGGTTCAGATAATGAAGACGCGTCCAAGACATCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGATTCGAACAATGAAGACGCATCCAAGACGTCTACAAAGTCATCAACAAAGCCATCATCCAAAGGTGCTGGTTCGGATAATGAAGATGGTCAAACCAAGACGTCCACAAAGTCATCGACAAAGCCATCATCCAAAGGTACTGGTTCAGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAAGGCTCAAAAGATACCGCAAAGTCAACATCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCAGACAAAGTCGAAATCAGCGAGAGGAAAGCAGGCAAGTCGTCAGGAGGGGCCCACTCTGAGAATAAGGACGAGGTGCCATCGACTAAAGAGATCATGAGCAGCGCGAAGTTGGTGGCGTCGGCGGCGCAGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAACCTTCTCGGCGCCGCCAATCACTATGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATCTGGATAAGGCTGAGGATATGCTCCGTAAGATGGCCAAGAAGTCTGATTCTGAGTCCGGCACCAGTGACGATAAGACTAAGAAGTCTGGCGCCGGTGATAGTAAAACTAAGAAGTCTGGCACCGGTGATAGTAAGACTAAGAAGTCTGGTGCTAGTGACGGTGAAGGTGATGAGGACAAGCTGAAGAAAAAATCGGAGAAGAAGCCAGCTGCCAAAGATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCTAAAGGTTTCTTGAAGGCCCCCTGCATGGCCCCCAACAAAGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

47.57

Weight (kDa)

9.14

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1180, 1240
AatII	GACGTC	4 cut(s)	155, 362, 638, 710
AccB1I	GGYRCC	8 cut(s)	257, 326, 395, 940, 1049, 1157, 1187, 1217
AccI	GTMKAC	3 cut(s)	155, 362, 638
AccII	CGCG	2 cut(s)	557, 971
AciI	CCGC	6 cut(s)	399, 819, 849, 989, 1025, 1053
AcoI	YGGCCR	1 cut(s)	1131
AcuI	CTGAAG	6 cut(s)	87, 156, 363, 432, 501, 1301
AcyI	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
AfaI	GTAC	2 cut(s)	121, 745
AfiI	CCNNNNNNNGG	3 cut(s)	392, 1129, 1393
AflIII	ACRYGT	1 cut(s)	555
AgeI	ACCGGT	1 cut(s)	1220
AgsI	TTSAA	2 cut(s)	1360, 1381
AluBI	AGCT	3 cut(s)	1072, 1279, 1307
AluI	AGCT	3 cut(s)	1072, 1279, 1307
AoxI	GGCC	5 cut(s)	915, 1014, 1131, 1383, 1395
ApaI	GGGCCC	1 cut(s)	919
ApeKI	GCWGC	3 cut(s)	966, 1031, 1307
AsiGI	ACCGGT	1 cut(s)	1220
AspLEI	GCGC	4 cut(s)	971, 994, 1052, 1190
AspS9I	GGNCC	4 cut(s)	915, 916, 1384, 1396
AsuHPI	GGTGA	4 cut(s)	1205, 1235, 1271, 1277
AsuII	TTCGAA	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	919
BalI	TGGCCA	1 cut(s)	1133
BanI	GGYRCC	8 cut(s)	257, 326, 395, 940, 1049, 1157, 1187, 1217
BanII	GRGCYC	1 cut(s)	919
BbsI	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 489, 558, 627
BbvCI	CCTCAGC	1 cut(s)	1110
BbvI	GCAGC	3 cut(s)	978, 1018, 1294
BceAI	ACGGC	3 cut(s)	229, 436, 778
BcgI	CGANNNNNNTGC	7 cut(s)	33, 458, 492, 885, 919, 1027, 1061
BfaI	CTAG	1 cut(s)	1251
BfoI	RGCGCY	2 cut(s)	1053, 1191
BisI	GCNGC	6 cut(s)	399, 967, 990, 1032, 1053, 1308
BlsI	GCNGC	6 cut(s)	400, 968, 991, 1033, 1054, 1309
BmgT120I	GGNCC	4 cut(s)	915, 916, 1384, 1396
BpiI	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 489, 558, 627
Bpu10I	CCTNAGC	1 cut(s)	1110
Bpu14I	TTCGAA	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	786, 1094
BsaHI	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	1220
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 1129, 1393
Bse118I	RCCGGY	2 cut(s)	1190, 1220
Bse1I	ACTGG	2 cut(s)	751, 1161
BseDI	CCNNGG	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	392, 1129, 1393
BseMII	CTCAG	3 cut(s)	915, 1101, 1140
BseNI	ACTGG	2 cut(s)	751, 1161
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	3 cut(s)	978, 1018, 1294
Bsh1236I	CGCG	2 cut(s)	557, 971
BshFI	GGCC	5 cut(s)	917, 1016, 1133, 1385, 1397
BshNI	GGYRCC	8 cut(s)	257, 326, 395, 940, 1049, 1157, 1187, 1217
BshTI	ACCGGT	1 cut(s)	1220
BsiSI	CCGG	4 cut(s)	846, 1155, 1191, 1221
BslI	CCNNNNNNNGG	3 cut(s)	392, 1129, 1393
BsnI	GGCC	5 cut(s)	917, 1016, 1133, 1385, 1397
Bsp119I	TTCGAA	1 cut(s)	611
Bsp120I	GGGCCC	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	1 cut(s)	957
BspACI	CCGC	6 cut(s)	399, 819, 849, 989, 1025, 1053
BspANI	GGCC	5 cut(s)	917, 1016, 1133, 1385, 1397
BspCNI	CTCAG	3 cut(s)	916, 1102, 1141
BspFNI	CGCG	2 cut(s)	557, 971
BspHI	TCATGA	1 cut(s)	960
BspT104I	TTCGAA	1 cut(s)	611
BspT107I	GGYRCC	8 cut(s)	257, 326, 395, 940, 1049, 1157, 1187, 1217
BsrFI	RCCGGY	2 cut(s)	1190, 1220
BsrI	ACTGG	2 cut(s)	751, 1161
BssAI	RCCGGY	2 cut(s)	1190, 1220
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	957
BssNI	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	315, 1259
BstACI	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	4 cut(s)	898, 1036, 1070, 1305
BstDEI	CTNAG	8 cut(s)	21, 423, 924, 1110, 1149, 1176, 1206, 1236
BstFNI	CGCG	2 cut(s)	557, 971
BstH2I	RGCGCY	2 cut(s)	1053, 1191
BstHHI	GCGC	4 cut(s)	971, 994, 1052, 1190
BstKTI	GATC	1 cut(s)	960
BstMBI	GATC	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	919
BstUI	CGCG	2 cut(s)	557, 971
BstV1I	GCAGC	3 cut(s)	978, 1018, 1294
BstV2I	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 489, 558, 627
BsuRI	GGCC	5 cut(s)	917, 1016, 1133, 1385, 1397
BtsIMutI	CAGTG	1 cut(s)	1168
Cac8I	GCNNGC	4 cut(s)	898, 1036, 1070, 1305
CciI	TCATGA	1 cut(s)	960
CfoI	GCGC	4 cut(s)	971, 994, 1052, 1190
Cfr10I	RCCGGY	2 cut(s)	1190, 1220
Cfr13I	GGNCC	4 cut(s)	915, 916, 1384, 1396
Csp6I	GTAC	2 cut(s)	120, 744
CspAI	ACCGGT	1 cut(s)	1220
CviAII	CATG	2 cut(s)	961, 1393
CviQI	GTAC	2 cut(s)	120, 744
DdeI	CTNAG	8 cut(s)	21, 423, 924, 1110, 1149, 1176, 1206, 1236
DinI	GGCGCC	2 cut(s)	1051, 1189
DpnI	GATC	1 cut(s)	959
DpnII	GATC	1 cut(s)	957
DrdI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1180, 1240
DseDI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1180, 1240
EaeI	YGGCCR	1 cut(s)	1131
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	1354
Eco57I	CTGAAG	6 cut(s)	87, 156, 363, 432, 501, 1301
EcoO109I	RGGNCCY	2 cut(s)	915, 1384
EcoRV	GATATC	1 cut(s)	1354
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	919
EgeI	GGCGCC	2 cut(s)	1051, 1189
EheI	GGCGCC	2 cut(s)	1051, 1189
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	964, 1396
FaiI	YATR	4 cut(s)	962, 1065, 1118, 1394
FatI	CATG	2 cut(s)	960, 1392
FauI	CCCGC	1 cut(s)	1018
FblI	GTMKAC	3 cut(s)	155, 362, 638
Fnu4HI	GCNGC	6 cut(s)	399, 967, 990, 1032, 1053, 1308
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	6 cut(s)	399, 967, 990, 1032, 1053, 1308
FspBI	CTAG	1 cut(s)	1251
GlaI	GCGC	4 cut(s)	970, 993, 1051, 1189
GluI	GCNGC	6 cut(s)	399, 967, 990, 1032, 1053, 1308
HaeII	RGCGCY	2 cut(s)	1053, 1191
HaeIII	GGCC	5 cut(s)	917, 1016, 1133, 1385, 1397
HapII	CCGG	4 cut(s)	846, 1155, 1191, 1221
HhaI	GCGC	4 cut(s)	971, 994, 1052, 1190
Hin1I	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
Hin1II	CATG	2 cut(s)	964, 1396
Hin6I	GCGC	4 cut(s)	969, 992, 1050, 1188
HinP1I	GCGC	4 cut(s)	969, 992, 1050, 1188
HincII	GTYRAC	2 cut(s)	249, 828
HindII	GTYRAC	2 cut(s)	249, 828
HindIII	AAGCTT	1 cut(s)	1070
HinfI	GANTC	7 cut(s)	125, 263, 470, 608, 863, 1145, 1151
HpaII	CCGG	4 cut(s)	846, 1155, 1191, 1221
HphI	GGTGA	4 cut(s)	1205, 1235, 1271, 1277
Hpy166II	GTNNAC	7 cut(s)	30, 156, 249, 363, 639, 711, 828
Hpy188III	TCNNGA	5 cut(s)	909, 961, 1100, 1357, 1378
Hpy8I	GTNNAC	7 cut(s)	30, 156, 249, 363, 639, 711, 828
Hpy99I	CGWCG	1 cut(s)	988
HpyAV	CCTTC	5 cut(s)	1006, 1052, 1256, 1322, 1375
HpyCH4III	ACNGT	2 cut(s)	315, 1259
HpyCH4IV	ACGT	4 cut(s)	152, 359, 635, 707
HpyCH4V	TGCA	2 cut(s)	275, 1392
HpyF3I	CTNAG	8 cut(s)	21, 423, 924, 1110, 1149, 1176, 1206, 1236
HpySE526I	ACGT	4 cut(s)	152, 359, 635, 707
Hsp92I	GRCGYC	7 cut(s)	152, 359, 635, 707, 983, 1050, 1188
Hsp92II	CATG	2 cut(s)	964, 1396
HspAI	GCGC	4 cut(s)	969, 992, 1050, 1188
KasI	GGCGCC	2 cut(s)	1049, 1187
Kzo9I	GATC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	1125
Lsp1109I	GCAGC	3 cut(s)	978, 1018, 1294
MaeI	CTAG	1 cut(s)	1251
MaeII	ACGT	4 cut(s)	152, 359, 635, 707
MaeIII	GTNAC	2 cut(s)	1163, 1253
MalI	GATC	1 cut(s)	959
MboI	GATC	1 cut(s)	957
MhlI	GDGCHC	1 cut(s)	919
MlsI	TGGCCA	1 cut(s)	1133
MluCI	AATT	1 cut(s)	331
MluI	ACGCGT	1 cut(s)	555
MluNI	TGGCCA	1 cut(s)	1133
Mly113I	GGCGCC	2 cut(s)	1050, 1188
MlyI	GAGTC	2 cut(s)	872, 1160
MnlI	CCTC	9 cut(s)	232, 301, 439, 882, 905, 931, 1105, 1264, 1315
Mox20I	TGGCCA	1 cut(s)	1133
MscI	TGGCCA	1 cut(s)	1133
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	1 cut(s)	1307
MspI	CCGG	4 cut(s)	846, 1155, 1191, 1221
MvnI	CGCG	2 cut(s)	557, 971
NarI	GGCGCC	2 cut(s)	1050, 1188
NdeII	GATC	1 cut(s)	957
NlaIII	CATG	2 cut(s)	964, 1396
NmeAIII	GCCGAG	2 cut(s)	1026, 1042
NmuCI	GTSAC	2 cut(s)	1163, 1253
NspV	TTCGAA	1 cut(s)	611
PagI	TCATGA	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	4 cut(s)	242, 311, 449, 882
PfeI	GAWTC	5 cut(s)	125, 263, 470, 608, 1145
PflFI	GACNNNGTC	1 cut(s)	872
PinAI	ACCGGT	1 cut(s)	1220
PkrI	GCNGC	6 cut(s)	400, 968, 991, 1033, 1054, 1309
PleI	GAGTC	2 cut(s)	871, 1159
PluTI	GGCGCC	2 cut(s)	1053, 1191
PpsI	GAGTC	2 cut(s)	871, 1159
PspOMI	GGGCCC	1 cut(s)	915
PspPI	GGNCC	4 cut(s)	915, 916, 1384, 1396
PsyI	GACNNNGTC	1 cut(s)	872
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	2 cut(s)	121, 745
RsaNI	GTAC	2 cut(s)	120, 744
SatI	GCNGC	6 cut(s)	399, 967, 990, 1032, 1053, 1308
Sau3AI	GATC	1 cut(s)	957
Sau96I	GGNCC	4 cut(s)	915, 916, 1384, 1396
SchI	GAGTC	2 cut(s)	872, 1160
SduI	GDGCHC	1 cut(s)	919
SfoI	GGCGCC	2 cut(s)	1051, 1189
SfuI	TTCGAA	1 cut(s)	611
SgrAI	CRCCGGYG	2 cut(s)	1190, 1220
SmlI	CTYRAG	2 cut(s)	801, 1073
SmoI	CTYRAG	2 cut(s)	801, 1073
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	399, 819, 849, 989, 1025, 1053
SspDI	GGCGCC	2 cut(s)	1049, 1187
SspMI	CTAG	1 cut(s)	1251
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	315, 1259
TaiI	ACGT	4 cut(s)	155, 362, 638, 710
TasI	AATT	1 cut(s)	331
TauI	GCSGC	3 cut(s)	401, 992, 1055
TfiI	GAWTC	5 cut(s)	125, 263, 470, 608, 1145
TscAI	CASTG	1 cut(s)	1168
TseFI	GTSAC	2 cut(s)	1163, 1253
TseI	GCWGC	3 cut(s)	966, 1031, 1307
Tsp45I	GTSAC	2 cut(s)	1163, 1253
TspDTI	ATGAA	5 cut(s)	219, 564, 633, 702, 774
TspGWI	ACGGA	1 cut(s)	1112
TspRI	CASTG	1 cut(s)	1168
Tth111I	GACNNNGTC	1 cut(s)	872
XmiI	GTMKAC	3 cut(s)	155, 362, 638
XspI	CTAG	1 cut(s)	1251
ZraI	GACGTC	4 cut(s)	153, 360, 636, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.