Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

53121163 .. 53124757

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG375300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAAAACGAAGACGATGCTAAGTCGTCCACAAAATCATCCACAAAACCATCATCTAAAGATGCTGAAGACGCTTCCAAGACATCTACAAAGTCATCGACAAAGCCATTATCCAAAGGTACTGATTCGGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCAGATGTTGCAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAACCGTCATCCAAAGGTGCCAATTTAGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCACCACCCAAAGGTGCCGCTTCGGATGCTGAAGACGCATCTAAGACCTCTACAAAGTCATCGACAAAGCCGTCATCCAAAAGTGCCGATTCGGATGCTGAAGACGCATCCAAGGCATCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGCTGGTTCAGATAATGAAGACGCGTCCAAGACATCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGGTTCGGATAATGAAGATGGTCAAACCAAGACGTCCACAAAGTCATCGACAAAGCCATCATCCAAAGGTACTGGTTCAGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAAGGCTCAAAAGATACCGCAAAGTCAACATCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCAGACAAAGTCGAAATCAGCGAGAGGAAAGCAGGCAAGTCGTCAGGAGGGGCCCACTCTGAGAATAAGGACGAGGTGCCATCGACTAAAGAGATCATGAGCAGCGCGAAGTTGGTGGCGTCGGCGGCGCAGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAACCTTCTCGGCGCCGCCAATCACTATGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATCTGGATAAGGCTGAGGATATGCTCCGTAAGATGGCCAAGAAGTCTGATTCTGAGTCCGGCACCAGTGACGATAAGACTAAGAAGTCTGGCGCCGGTGATAGTAAAACTAAGAAGTCTGGCACCGGTGATAGTAAGACTAAGAAGTCTGGTGCTAGTGACGGTGAAGGTGATGAGGACAAGCTGAAGAAAAAATCGGAGAAGAAGCCAGCTGCCAAAGATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCTAAAGGTTTCTTGAAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

44.28

Weight (kDa)

9.15

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1111, 1171
AatII	GACGTC	3 cut(s)	155, 362, 641
AccB1I	GGYRCC	8 cut(s)	257, 326, 395, 871, 980, 1088, 1118, 1148
AccI	GTMKAC	2 cut(s)	155, 362
AccII	CGCG	2 cut(s)	557, 902
AciI	CCGC	6 cut(s)	399, 750, 780, 920, 956, 984
AcoI	YGGCCR	1 cut(s)	1062
AcuI	CTGAAG	6 cut(s)	87, 156, 363, 432, 501, 1232
AcyI	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
AfaI	GTAC	2 cut(s)	121, 676
AfiI	CCNNNNNNNGG	2 cut(s)	392, 1060
AflIII	ACRYGT	1 cut(s)	555
AgeI	ACCGGT	1 cut(s)	1151
AgsI	TTSAA	2 cut(s)	1291, 1312
AluBI	AGCT	3 cut(s)	1003, 1210, 1238
AluI	AGCT	3 cut(s)	1003, 1210, 1238
AoxI	GGCC	3 cut(s)	846, 945, 1062
ApaI	GGGCCC	1 cut(s)	850
ApeKI	GCWGC	3 cut(s)	897, 962, 1238
AsiGI	ACCGGT	1 cut(s)	1151
AspLEI	GCGC	4 cut(s)	902, 925, 983, 1121
AspS9I	GGNCC	2 cut(s)	846, 847
AsuHPI	GGTGA	4 cut(s)	1136, 1166, 1202, 1208
BaeGI	GKGCMC	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	1064
BanI	GGYRCC	8 cut(s)	257, 326, 395, 871, 980, 1088, 1118, 1148
BanII	GRGCYC	1 cut(s)	850
BbsI	GAAGAC	8 cut(s)	18, 75, 144, 213, 351, 420, 489, 558
BbvCI	CCTCAGC	1 cut(s)	1041
BbvI	GCAGC	3 cut(s)	909, 949, 1225
BccI	CCATC	9 cut(s)	58, 184, 529, 598, 617, 670, 883, 1054, 1288
BceAI	ACGGC	3 cut(s)	229, 436, 709
BcgI	CGANNNNNNTGC	7 cut(s)	33, 458, 492, 816, 850, 958, 992
BfaI	CTAG	1 cut(s)	1182
BfoI	RGCGCY	2 cut(s)	984, 1122
BisI	GCNGC	6 cut(s)	399, 898, 921, 963, 984, 1239
BlsI	GCNGC	6 cut(s)	400, 899, 922, 964, 985, 1240
BmgT120I	GGNCC	2 cut(s)	846, 847
BpiI	GAAGAC	8 cut(s)	18, 75, 144, 213, 351, 420, 489, 558
Bpu10I	CCTNAGC	1 cut(s)	1041
BpuEI	CTTGAG	2 cut(s)	717, 1025
BsaHI	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	1151
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 1060
Bse118I	RCCGGY	2 cut(s)	1121, 1151
Bse1I	ACTGG	2 cut(s)	682, 1092
BseDI	CCNNGG	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	392, 1060
BseMII	CTCAG	3 cut(s)	846, 1032, 1071
BseNI	ACTGG	2 cut(s)	682, 1092
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	3 cut(s)	909, 949, 1225
Bsh1236I	CGCG	2 cut(s)	557, 902
BshFI	GGCC	3 cut(s)	848, 947, 1064
BshNI	GGYRCC	8 cut(s)	257, 326, 395, 871, 980, 1088, 1118, 1148
BshTI	ACCGGT	1 cut(s)	1151
BsiSI	CCGG	4 cut(s)	777, 1086, 1122, 1152
BslI	CCNNNNNNNGG	2 cut(s)	392, 1060
BsnI	GGCC	3 cut(s)	848, 947, 1064
Bsp120I	GGGCCC	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	1 cut(s)	888
BspACI	CCGC	6 cut(s)	399, 750, 780, 920, 956, 984
BspANI	GGCC	3 cut(s)	848, 947, 1064
BspCNI	CTCAG	3 cut(s)	847, 1033, 1072
BspFNI	CGCG	2 cut(s)	557, 902
BspHI	TCATGA	1 cut(s)	891
BspT107I	GGYRCC	8 cut(s)	257, 326, 395, 871, 980, 1088, 1118, 1148
BsrFI	RCCGGY	2 cut(s)	1121, 1151
BsrI	ACTGG	2 cut(s)	682, 1092
BssAI	RCCGGY	2 cut(s)	1121, 1151
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	888
BssNI	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	315, 1190
BstACI	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
BstC8I	GCNNGC	4 cut(s)	829, 967, 1001, 1236
BstDEI	CTNAG	8 cut(s)	21, 423, 855, 1041, 1080, 1107, 1137, 1167
BstFNI	CGCG	2 cut(s)	557, 902
BstH2I	RGCGCY	2 cut(s)	984, 1122
BstHHI	GCGC	4 cut(s)	902, 925, 983, 1121
BstKTI	GATC	1 cut(s)	891
BstMBI	GATC	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	2 cut(s)	557, 902
BstV1I	GCAGC	3 cut(s)	909, 949, 1225
BstV2I	GAAGAC	8 cut(s)	18, 75, 144, 213, 351, 420, 489, 558
BsuRI	GGCC	3 cut(s)	848, 947, 1064
BtsIMutI	CAGTG	1 cut(s)	1099
Cac8I	GCNNGC	4 cut(s)	829, 967, 1001, 1236
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	4 cut(s)	902, 925, 983, 1121
Cfr10I	RCCGGY	2 cut(s)	1121, 1151
Cfr13I	GGNCC	2 cut(s)	846, 847
Csp6I	GTAC	2 cut(s)	120, 675
CspAI	ACCGGT	1 cut(s)	1151
CviAII	CATG	1 cut(s)	892
CviQI	GTAC	2 cut(s)	120, 675
DdeI	CTNAG	8 cut(s)	21, 423, 855, 1041, 1080, 1107, 1137, 1167
DinI	GGCGCC	2 cut(s)	982, 1120
DpnI	GATC	1 cut(s)	890
DpnII	GATC	1 cut(s)	888
DrdI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1111, 1171
DseDI	GACNNNNNNGTC	5 cut(s)	244, 313, 451, 1111, 1171
EaeI	YGGCCR	1 cut(s)	1062
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	850
Eco32I	GATATC	1 cut(s)	1285
Eco57I	CTGAAG	6 cut(s)	87, 156, 363, 432, 501, 1232
EcoO109I	RGGNCCY	1 cut(s)	846
EcoRV	GATATC	1 cut(s)	1285
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	850
EgeI	GGCGCC	2 cut(s)	982, 1120
EheI	GGCGCC	2 cut(s)	982, 1120
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	1 cut(s)	895
FaiI	YATR	3 cut(s)	893, 996, 1049
FatI	CATG	1 cut(s)	891
FauI	CCCGC	1 cut(s)	949
FblI	GTMKAC	2 cut(s)	155, 362
Fnu4HI	GCNGC	6 cut(s)	399, 898, 921, 963, 984, 1239
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	6 cut(s)	399, 898, 921, 963, 984, 1239
FspBI	CTAG	1 cut(s)	1182
GlaI	GCGC	4 cut(s)	901, 924, 982, 1120
GluI	GCNGC	6 cut(s)	399, 898, 921, 963, 984, 1239
HaeII	RGCGCY	2 cut(s)	984, 1122
HaeIII	GGCC	3 cut(s)	848, 947, 1064
HapII	CCGG	4 cut(s)	777, 1086, 1122, 1152
HhaI	GCGC	4 cut(s)	902, 925, 983, 1121
Hin1I	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
Hin1II	CATG	1 cut(s)	895
Hin6I	GCGC	4 cut(s)	900, 923, 981, 1119
HinP1I	GCGC	4 cut(s)	900, 923, 981, 1119
HincII	GTYRAC	2 cut(s)	249, 759
HindII	GTYRAC	2 cut(s)	249, 759
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	6 cut(s)	125, 263, 470, 794, 1076, 1082
HpaII	CCGG	4 cut(s)	777, 1086, 1122, 1152
HphI	GGTGA	4 cut(s)	1136, 1166, 1202, 1208
Hpy166II	GTNNAC	6 cut(s)	30, 156, 249, 363, 642, 759
Hpy188III	TCNNGA	5 cut(s)	840, 892, 1031, 1288, 1309
Hpy8I	GTNNAC	6 cut(s)	30, 156, 249, 363, 642, 759
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	5 cut(s)	937, 983, 1187, 1253, 1306
HpyCH4III	ACNGT	2 cut(s)	315, 1190
HpyCH4IV	ACGT	3 cut(s)	152, 359, 638
HpyCH4V	TGCA	1 cut(s)	275
HpyF3I	CTNAG	8 cut(s)	21, 423, 855, 1041, 1080, 1107, 1137, 1167
HpySE526I	ACGT	3 cut(s)	152, 359, 638
Hsp92I	GRCGYC	6 cut(s)	152, 359, 638, 914, 981, 1119
Hsp92II	CATG	1 cut(s)	895
HspAI	GCGC	4 cut(s)	900, 923, 981, 1119
KasI	GGCGCC	2 cut(s)	980, 1118
Kzo9I	GATC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	1056
Lsp1109I	GCAGC	3 cut(s)	909, 949, 1225
MaeI	CTAG	1 cut(s)	1182
MaeII	ACGT	3 cut(s)	152, 359, 638
MaeIII	GTNAC	2 cut(s)	1094, 1184
MalI	GATC	1 cut(s)	890
MboI	GATC	1 cut(s)	888
MhlI	GDGCHC	1 cut(s)	850
MlsI	TGGCCA	1 cut(s)	1064
MluCI	AATT	1 cut(s)	331
MluI	ACGCGT	1 cut(s)	555
MluNI	TGGCCA	1 cut(s)	1064
Mly113I	GGCGCC	2 cut(s)	981, 1119
MlyI	GAGTC	2 cut(s)	803, 1091
MnlI	CCTC	9 cut(s)	232, 301, 439, 813, 836, 862, 1036, 1195, 1246
Mox20I	TGGCCA	1 cut(s)	1064
MscI	TGGCCA	1 cut(s)	1064
Msp20I	TGGCCA	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	1238
MspI	CCGG	4 cut(s)	777, 1086, 1122, 1152
MvnI	CGCG	2 cut(s)	557, 902
NarI	GGCGCC	2 cut(s)	981, 1119
NdeII	GATC	1 cut(s)	888
NlaIII	CATG	1 cut(s)	895
NmeAIII	GCCGAG	2 cut(s)	957, 973
NmuCI	GTSAC	2 cut(s)	1094, 1184
PagI	TCATGA	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	4 cut(s)	242, 311, 449, 813
PfeI	GAWTC	4 cut(s)	125, 263, 470, 1076
PflFI	GACNNNGTC	1 cut(s)	803
PinAI	ACCGGT	1 cut(s)	1151
PkrI	GCNGC	6 cut(s)	400, 899, 922, 964, 985, 1240
PleI	GAGTC	2 cut(s)	802, 1090
PluTI	GGCGCC	2 cut(s)	984, 1122
PpsI	GAGTC	2 cut(s)	802, 1090
PspOMI	GGGCCC	1 cut(s)	846
PspPI	GGNCC	2 cut(s)	846, 847
PsyI	GACNNNGTC	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	1238
RsaI	GTAC	2 cut(s)	121, 676
RsaNI	GTAC	2 cut(s)	120, 675
SatI	GCNGC	6 cut(s)	399, 898, 921, 963, 984, 1239
Sau3AI	GATC	1 cut(s)	888
Sau96I	GGNCC	2 cut(s)	846, 847
SchI	GAGTC	2 cut(s)	803, 1091
SduI	GDGCHC	1 cut(s)	850
SfoI	GGCGCC	2 cut(s)	982, 1120
SgrAI	CRCCGGYG	2 cut(s)	1121, 1151
SmlI	CTYRAG	2 cut(s)	732, 1004
SmoI	CTYRAG	2 cut(s)	732, 1004
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	399, 750, 780, 920, 956, 984
SspDI	GGCGCC	2 cut(s)	980, 1118
SspMI	CTAG	1 cut(s)	1182
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	315, 1190
TaiI	ACGT	3 cut(s)	155, 362, 641
TasI	AATT	1 cut(s)	331
TauI	GCSGC	3 cut(s)	401, 923, 986
TfiI	GAWTC	4 cut(s)	125, 263, 470, 1076
TscAI	CASTG	1 cut(s)	1099
TseFI	GTSAC	2 cut(s)	1094, 1184
TseI	GCWGC	3 cut(s)	897, 962, 1238
Tsp45I	GTSAC	2 cut(s)	1094, 1184
TspDTI	ATGAA	4 cut(s)	219, 564, 633, 705
TspGWI	ACGGA	1 cut(s)	1043
TspRI	CASTG	1 cut(s)	1099
Tth111I	GACNNNGTC	1 cut(s)	803
XmiI	GTMKAC	2 cut(s)	155, 362
XspI	CTAG	1 cut(s)	1182
ZraI	GACGTC	3 cut(s)	153, 360, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.