Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

17247029 .. 17249828

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAGGAATTCACAGTGGTGGCTGCATCTGGATCTGTGGCGTGGCTGAGGTTTGAGACCGGTCCAGCATCGGATCCTAGTCGGATTGGGGAGGTGTCTTGCGTCGGTCGGAAGGTGTGGTGGGATCTACTATTTGCTGCTGCGGATCGGTGGATCGACGGTGGTCATTTGTGGTTTGATTTCAGTTTCTGTCGTAGATCCATAGGTTTTGGATGTTTGGGTCTACGGTGGTGCGCGAGGTCAGGCAGGCAGGGGAGCGCTGATCCTGGGGATCTGACGCTGGTGGTGGAGCAGCAGGAGTGGTGGGGAAGCGACGATGCAGGTGCAGCTGGTGACGTGATTTGCCGAACATCGTCCATCCATTTGCTGTTTGATTCTCTGAATCTGGAATTTGAAATAATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.88

Weight (kDa)

4.57

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	236
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	9 cut(s)	40, 68, 81, 132, 153, 161, 192, 257, 279
AcsI	RAATTY	2 cut(s)	8, 389
AfeI	AGCGCT	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	9 cut(s)	40, 68, 81, 132, 153, 161, 192, 257, 279
AlwNI	CAGNNNCTG	1 cut(s)	189
Aor51HI	AGCGCT	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	23, 137, 140, 292, 326
ApoI	RAATTY	2 cut(s)	8, 389
AsiGI	ACCGGT	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	236, 260
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	5 cut(s)	10, 124, 127, 304, 338
BccI	CCATC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	5 cut(s)	24, 138, 141, 293, 327
BlsI	GCNGC	5 cut(s)	25, 139, 142, 294, 328
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	35, 77, 307
BoxI	GACNNNNGTC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	218, 357
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	5 cut(s)	10, 124, 127, 304, 338
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	9 cut(s)	40, 68, 81, 132, 153, 161, 192, 257, 279
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	16, 161, 228
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	218, 357
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	236, 260
BstKTI	GATC	8 cut(s)	35, 76, 127, 148, 156, 200, 265, 274
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	5 cut(s)	10, 124, 127, 304, 338
BstX2I	RGATCY	5 cut(s)	32, 73, 124, 197, 271
BstYI	RGATCY	5 cut(s)	32, 73, 124, 197, 271
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	218, 357
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	189
CfoI	GCGC	2 cut(s)	236, 260
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	2 cut(s)	91, 286
CspAI	ACCGGT	1 cut(s)	59
CviJI	RGCY	3 cut(s)	23, 46, 329
CviKI_1	RGCY	3 cut(s)	23, 46, 329
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	8 cut(s)	34, 75, 126, 147, 155, 199, 264, 273
DpnII	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	265
FaiI	YATR	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	24, 138, 141, 293, 327
FokI	GGATG	2 cut(s)	225, 344
Fsp4HI	GCNGC	5 cut(s)	24, 138, 141, 293, 327
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	235, 259
GluI	GCNGC	5 cut(s)	24, 138, 141, 293, 327
HaeII	RGCGCY	1 cut(s)	261
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	2 cut(s)	91, 286
HhaI	GCGC	2 cut(s)	236, 260
Hin6I	GCGC	2 cut(s)	234, 258
HinP1I	GCGC	2 cut(s)	234, 258
HinfI	GANTC	2 cut(s)	374, 382
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	6 cut(s)	73, 84, 111, 276, 381, 404
Hpy188III	TCNNGA	2 cut(s)	30, 386
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	3 cut(s)	107, 161, 317
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	16, 161, 228
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	26, 320, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	336
HspAI	GCGC	2 cut(s)	234, 258
Kzo9I	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
LmnI	GCTCC	2 cut(s)	255, 289
Lsp1109I	GCAGC	5 cut(s)	10, 124, 127, 304, 338
LweI	GCATC	3 cut(s)	35, 77, 307
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	8 cut(s)	34, 75, 126, 147, 155, 199, 264, 273
MboI	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
MflI	RGATCY	5 cut(s)	32, 73, 124, 197, 271
MluCI	AATT	2 cut(s)	8, 389
MmeI	TCCRAC	2 cut(s)	62, 89
MnlI	CCTC	3 cut(s)	42, 85, 231
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	374, 382
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	25, 139, 142, 294, 328
PshAI	GACNNNNGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	5 cut(s)	32, 73, 124, 197, 271
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	17
SatI	GCNGC	5 cut(s)	24, 138, 141, 293, 327
Sau3AI	GATC	8 cut(s)	32, 73, 124, 145, 153, 197, 262, 271
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	8 cut(s)	53, 96, 117, 208, 242, 325, 331, 339
SfaNI	GCATC	3 cut(s)	35, 77, 307
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	8, 389
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	16, 161, 228
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	8, 389
TfiI	GAWTC	2 cut(s)	374, 382
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	5 cut(s)	23, 137, 140, 292, 326
Tsp45I	GTSAC	1 cut(s)	332
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	8, 389
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.