Rh5AG078000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000749
Physical Location & Seq
Reverse (-)
6695224 .. 6697674
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG078000.1

Sequence Viewer

Length: 291 bp
ATGCCGAGCGACGACTCCAAGGTGCCGCAGGTTGCAGGCGGTCTGGCTATCGCCATCACTCAGTACGACATCGAAGAAGTACAGCAACACTTGCAACCACACATTTTCGCAGCAGAAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCACTGTGGCGGAGGTTTCATCTTCGCCGACGAGTTTTTTGTCCGTACCGGAATTCGCAGTCAATCCTCTCTCTCAGTTTTGGCTGGGTGGACGTAGATACTGGGGGAGAGATGGAGCAAGACCACACTTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

5.42

Isoelectric Point (pI)

82.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 3 cut(s) 26, 39, 163
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 4 cut(s) 65, 81, 132, 200
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 205
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
BanI GGYRCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 62, 259
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 2 cut(s) 26, 111
BlsI GCNGC 2 cut(s) 27, 112
BmiI GGNNCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 74, 241
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 202
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 3 cut(s) 26, 39, 163
BspCNI CTCAG 2 cut(s) 73, 240
BspLI GGNNCC 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 60, 227, 288
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 37
Csp6I GTAC 4 cut(s) 64, 80, 131, 199
CviJI RGCY 3 cut(s) 47, 149, 237
CviKI_1 RGCY 3 cut(s) 47, 149, 237
CviQI GTAC 4 cut(s) 64, 80, 131, 199
DdeI CTNAG 3 cut(s) 60, 227, 288
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 26, 111
Fsp4HI GCNGC 2 cut(s) 26, 111
GluI GCNGC 2 cut(s) 26, 111
GsaI CCCAGC 1 cut(s) 241
HapII CCGG 1 cut(s) 202
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 14, 186
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 35, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 3 cut(s) 60, 227, 288
HpySE526I ACGT 1 cut(s) 246
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 14, 21, 29, 215, 223, 240
Lsp1109I GCAGC 1 cut(s) 122
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 3 cut(s) 86, 128, 167
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 3 cut(s) 130, 159, 230
MspI CCGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 24
NmeAIII GCCGAG 1 cut(s) 30
PkrI GCNGC 2 cut(s) 27, 112
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 24
PsrI GAACNNNNNNTAC 2 cut(s) 123, 155
RsaI GTAC 4 cut(s) 65, 81, 132, 200
RsaNI GTAC 4 cut(s) 64, 80, 131, 199
SatI GCNGC 2 cut(s) 26, 111
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 1 cut(s) 8
SetI ASST 6 cut(s) 24, 33, 141, 151, 170, 249
Sse9I AATT 1 cut(s) 205
SsiI CCGC 3 cut(s) 26, 39, 163
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 72, 151
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 28
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.