MD13G1065700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
4546484 .. 4548043
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1065700.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGGATCGGCTTTCATCAGCTTTCTCTTCCTTAGGTTACGGGGACAAAGACGACGATGATCAATACGATGGCCAGAGAAAATCCGGGACAGAGGGTCACCACCGGTCCGGAGGTTACGGGGACAAAGACCAAGACGATCAATATGGTGGCGAGAGAAAATCCGCGACTGAGGGTCACCACCGGTCTGGAGGTTACAGGGAGAAATACCAGGACGATCAGTATGGCGGCGAGAGAAAATCTGTGACCGAGGGTCACCACCGGTCCGGAGGATATGGGGACAAATACCAGGAAGATGAATATGGTGGCGAGAGAAAATCCGCGACTGAGGGTCACCACCGGTCCGGAGGATACGGGGACAAATACCAGGAGGATGAATATGGTGGCGAGAGAAAATCCGCGACCGAGGGTCATCACCGGTCCGGAGGATACGGGGACAAATACCAGGACGATGAATATGGTGGCGAGAGAAAATCCGCGACCGAGGGTCACCACCGGTCCGGAGGATACGGCGACAAATACCAGGATGATGAATATGGTGGCGAGAGAAAATCCGCGACTGAGGGTCACTACCGGTCCGGAGGTTATGGGGACAAAGACCAGGAAGATCAATATGGTGGCGAGAGAAAATCCGCGGCTGAGGGTCACCACGGGAAGCCGGAGGGCCACTACGGGAAGCCGGGACATGCTGCACCGACGACGAGCGAGCTGATGTCTAGTGCCAAGATTGTGGCGGAAGCAGCCAAATCTTCGATGAACAAAGGCGGCGGGGAAAAGATCGACAGAGCTAGGGTTTCGGAGGCTGCTAGTAACATCCTAAGCGCTGCCGCGCACTATGGGAAGCTGGACGAGAAAGAAGGACTTGGGAGTTATGTTAGAAGGGCTGAGGATATGCTTCACAAGTACGGCAGCGGCGGCGGCGGAAGCGGCGGAGGAGGAAGCCACTACTCTTCTGAGTCTCATAACTCTGGAGGAGGAGGCCACTACTCTTCCGAGTCTCATAAGCATGGTGTGGGGAAGGAGAGAAGAGACGATGATGAGAACTATCCGGTGAGCGGAGAGCATGAGACTAAGAAGAAACATGGTAAAAAGGATGAGGAGGAGGAGGAGGGTGGATCAGGTGGGTTTGGTGATTATCTTAAGGTGGCTCAGGGATTCTTGAAGAAGTGA

Protein Analysis

389

Amino Acids

41.99

Weight (kDa)

5.8

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1053
AccII CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
AccIII TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
AclWI GGATC 2 cut(s) 12, 1120
AcoI YGGCCR 1 cut(s) 70
AfaI GTAC 1 cut(s) 902
AfeI AGCGCT 1 cut(s) 820
AfiI CCNNNNNNNGG 1 cut(s) 1052
AflII CTTAAG 1 cut(s) 1136
AgeI ACCGGT 7 cut(s) 102, 180, 258, 336, 414, 492, 570
AgsI TTSAA 1 cut(s) 1159
AhdI GACNNNNNGTC 7 cut(s) 93, 171, 249, 327, 405, 483, 561
AjnI CCWGG 6 cut(s) 207, 285, 363, 441, 519, 597
AluBI AGCT 4 cut(s) 20, 706, 785, 841
AluI AGCT 4 cut(s) 20, 706, 785, 841
Alw26I GTCTC 4 cut(s) 960, 999, 1020, 1058
AlwI GGATC 2 cut(s) 12, 1120
Aor13HI TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
Aor51HI AGCGCT 1 cut(s) 820
AoxI GGCC 3 cut(s) 70, 661, 976
ApeKI GCWGC 5 cut(s) 686, 737, 800, 821, 906
AsiGI ACCGGT 7 cut(s) 102, 180, 258, 336, 414, 492, 570
AspLEI GCGC 2 cut(s) 821, 829
AspS9I GGNCC 7 cut(s) 105, 261, 339, 417, 495, 573, 661
AsuC2I CCSGG 2 cut(s) 85, 678
AsuHPI GGTGA 9 cut(s) 89, 167, 245, 323, 404, 479, 635, 1060, 1139
AvaII GGWCC 6 cut(s) 105, 261, 339, 417, 495, 573
AxyI CCTNAGG 1 cut(s) 31
BalI TGGCCA 1 cut(s) 72
BbvCI CCTCAGC 2 cut(s) 636, 882
BbvI GCAGC 5 cut(s) 673, 749, 787, 808, 918
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 523, 919
BciT130I CCWGG 6 cut(s) 209, 287, 365, 443, 521, 599
BciVI GTATCC 3 cut(s) 341, 419, 497
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 2 cut(s) 85, 678
BcoDI GTCTC 4 cut(s) 960, 999, 1020, 1058
BfaI CTAG 3 cut(s) 714, 786, 804
BfoI RGCGCY 1 cut(s) 822
BfrI CTTAAG 1 cut(s) 1136
BfuI GTATCC 3 cut(s) 341, 419, 497
Bme1390I CCNGG 8 cut(s) 85, 209, 287, 365, 443, 521, 599, 678
Bme18I GGWCC 6 cut(s) 105, 261, 339, 417, 495, 573
BmeRI GACNNNNNGTC 7 cut(s) 93, 171, 249, 327, 405, 483, 561
BmgT120I GGNCC 7 cut(s) 105, 261, 339, 417, 495, 573, 661
BmrFI CCNGG 8 cut(s) 85, 209, 287, 365, 443, 521, 599, 678
BpmI CTGGAG 2 cut(s) 207, 987
Bpu10I CCTNAGC 4 cut(s) 636, 815, 882, 1146
BpuMI CCSGG 2 cut(s) 85, 678
BsaJI CCNNGG 5 cut(s) 246, 402, 480, 630, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 1052
Bse118I RCCGGY 7 cut(s) 102, 180, 258, 336, 414, 492, 570
Bse21I CCTNAGG 1 cut(s) 31
BseAI TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
BseBI CCWGG 6 cut(s) 209, 287, 365, 443, 521, 599
BseDI CCNNGG 5 cut(s) 246, 402, 480, 630, 646
BseGI GGATG 4 cut(s) 376, 529, 810, 1096
BseLI CCNNNNNNNGG 1 cut(s) 1052
BseMII CTCAG 7 cut(s) 159, 315, 549, 627, 873, 942, 1160
BseRI GAGGAG 7 cut(s) 945, 984, 987, 1109, 1112, 1115, 1118
BseXI GCAGC 5 cut(s) 673, 749, 787, 808, 918
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
Bsh1285I CGRYCG 2 cut(s) 402, 480
BshFI GGCC 3 cut(s) 72, 663, 978
BshTI ACCGGT 7 cut(s) 102, 180, 258, 336, 414, 492, 570
BsiEI CGRYCG 2 cut(s) 402, 480
BslFI GGGAC 8 cut(s) 56, 100, 134, 290, 368, 446, 602, 693
BslI CCNNNNNNNGG 1 cut(s) 1052
BsmAI GTCTC 4 cut(s) 960, 999, 1020, 1058
BsmBI CGTCTC 1 cut(s) 1020
BsmFI GGGAC 8 cut(s) 56, 100, 134, 290, 368, 446, 602, 693
BsnI GGCC 3 cut(s) 72, 663, 978
Bsp13I TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
Bsp143I GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
BspANI GGCC 3 cut(s) 72, 663, 978
BspCNI CTCAG 7 cut(s) 160, 316, 550, 628, 874, 943, 1159
BspEI TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
BspFNI CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
BspPI GGATC 2 cut(s) 12, 1120
BspTI CTTAAG 1 cut(s) 1136
BsrBI CCGCTC 1 cut(s) 1053
BsrFI RCCGGY 7 cut(s) 102, 180, 258, 336, 414, 492, 570
BssAI RCCGGY 7 cut(s) 102, 180, 258, 336, 414, 492, 570
BssECI CCNNGG 5 cut(s) 246, 402, 480, 630, 646
BssMI GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
Bst2UI CCWGG 6 cut(s) 209, 287, 365, 443, 521, 599
Bst6I CTCTTC 4 cut(s) 31, 952, 991, 1018
BstAFI CTTAAG 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 704
BstDSI CCRYGG 2 cut(s) 630, 646
BstEII GGTNACC 6 cut(s) 95, 173, 251, 329, 485, 641
BstF5I GGATG 4 cut(s) 376, 529, 810, 1096
BstFNI CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 2 cut(s) 821, 829
BstKTI GATC 7 cut(s) 7, 61, 139, 217, 607, 777, 1115
BstMAI GTCTC 4 cut(s) 960, 999, 1020, 1058
BstMBI GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
BstMCI CGRYCG 2 cut(s) 402, 480
BstMWI GCNNNNNNNGC 5 cut(s) 737, 912, 915, 921, 924
BstNI CCWGG 6 cut(s) 209, 287, 365, 443, 521, 599
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 6 cut(s) 95, 173, 251, 329, 485, 641
BstSCI CCNGG 8 cut(s) 83, 207, 285, 363, 441, 519, 597, 676
BstUI CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
BstV1I GCAGC 5 cut(s) 673, 749, 787, 808, 918
BstXI CCANNNNNNTGG 2 cut(s) 185, 727
Bsu36I CCTNAGG 1 cut(s) 31
BsuI GTATCC 3 cut(s) 341, 419, 497
BsuRI GGCC 3 cut(s) 72, 663, 978
BtgI CCRYGG 2 cut(s) 630, 646
BtsCI GGATG 4 cut(s) 376, 529, 810, 1096
Cac8I GCNNGC 1 cut(s) 704
CfoI GCGC 2 cut(s) 821, 829
Cfr10I RCCGGY 7 cut(s) 102, 180, 258, 336, 414, 492, 570
Cfr13I GGNCC 7 cut(s) 105, 261, 339, 417, 495, 573, 661
Cfr42I CCGCGG 1 cut(s) 633
CpoI CGGWCCG 6 cut(s) 105, 261, 339, 417, 495, 573
Csp6I GTAC 1 cut(s) 901
CspAI ACCGGT 7 cut(s) 102, 180, 258, 336, 414, 492, 570
CspI CGGWCCG 6 cut(s) 105, 261, 339, 417, 495, 573
CviAII CATG 4 cut(s) 683, 1004, 1061, 1079
CviQI GTAC 1 cut(s) 901
DpnI GATC 7 cut(s) 6, 60, 138, 216, 606, 776, 1114
DpnII GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
DriI GACNNNNNGTC 7 cut(s) 93, 171, 249, 327, 405, 483, 561
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 4 cut(s) 31, 952, 991, 1018
Eam1105I GACNNNNNGTC 7 cut(s) 93, 171, 249, 327, 405, 483, 561
EarI CTCTTC 4 cut(s) 31, 952, 991, 1018
EciI GGCGGA 3 cut(s) 746, 933, 942
Eco47I GGWCC 6 cut(s) 105, 261, 339, 417, 495, 573
Eco47III AGCGCT 1 cut(s) 820
Eco81I CCTNAGG 1 cut(s) 31
Eco91I GGTNACC 6 cut(s) 95, 173, 251, 329, 485, 641
EcoO65I GGTNACC 6 cut(s) 95, 173, 251, 329, 485, 641
EcoRII CCWGG 6 cut(s) 207, 285, 363, 441, 519, 597
Esp3I CGTCTC 1 cut(s) 1020
FaeI CATG 4 cut(s) 686, 1007, 1064, 1082
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 8 cut(s) 56, 100, 134, 290, 368, 446, 602, 693
FatI CATG 4 cut(s) 682, 1003, 1060, 1078
FauI CCCGC 1 cut(s) 758
FbaI TGATCA 1 cut(s) 58
FokI GGATG 4 cut(s) 383, 536, 797, 1103
FspBI CTAG 3 cut(s) 714, 786, 804
GlaI GCGC 2 cut(s) 820, 828
GsuI CTGGAG 2 cut(s) 207, 987
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 3 cut(s) 72, 663, 978
HhaI GCGC 2 cut(s) 821, 829
Hin1II CATG 4 cut(s) 686, 1007, 1064, 1082
Hin6I GCGC 2 cut(s) 819, 827
HinP1I GCGC 2 cut(s) 819, 827
HinfI GANTC 3 cut(s) 953, 992, 1152
HphI GGTGA 9 cut(s) 89, 167, 245, 323, 404, 479, 635, 1060, 1139
Hpy188I TCNGA 3 cut(s) 796, 952, 991
Hpy188III TCNNGA 9 cut(s) 108, 186, 264, 342, 420, 498, 576, 966, 1156
Hpy99I CGWCG 3 cut(s) 56, 697, 700
HpyAV CCTTC 3 cut(s) 848, 870, 1009
HpyCH4V TGCA 1 cut(s) 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 737, 912, 915, 921, 924
Hsp92II CATG 4 cut(s) 686, 1007, 1064, 1082
HspAI GCGC 2 cut(s) 819, 827
Kpn2I TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
Ksp22I TGATCA 1 cut(s) 58
KspI CCGCGG 1 cut(s) 633
Kzo9I GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
Lsp1109I GCAGC 5 cut(s) 673, 749, 787, 808, 918
MaeI CTAG 3 cut(s) 714, 786, 804
MalI GATC 7 cut(s) 6, 60, 138, 216, 606, 776, 1114
MbiI CCGCTC 1 cut(s) 1053
MboI GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
MboII GAAGA 8 cut(s) 18, 302, 614, 738, 939, 978, 1035, 1084
MlsI TGGCCA 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 2 cut(s) 962, 1001
Mox20I TGGCCA 1 cut(s) 72
MroI TCCGGA 6 cut(s) 107, 263, 341, 419, 497, 575
MscI TGGCCA 1 cut(s) 72
MseI TTAA 1 cut(s) 1137
MslI CAYNNNNRTG 1 cut(s) 1002
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 632, 909
MspCI CTTAAG 1 cut(s) 1136
MspR9I CCNGG 8 cut(s) 85, 209, 287, 365, 443, 521, 599, 678
MvaI CCWGG 6 cut(s) 209, 287, 365, 443, 521, 599
MvnI CGCG 7 cut(s) 164, 320, 398, 476, 554, 632, 827
MwoI GCNNNNNNNGC 5 cut(s) 737, 912, 915, 921, 924
NciI CCSGG 2 cut(s) 85, 678
NdeII GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
NlaIII CATG 4 cut(s) 686, 1007, 1064, 1082
NmuCI GTSAC 8 cut(s) 95, 173, 241, 251, 329, 485, 563, 641
NspI RCATGY 1 cut(s) 686
PfeI GAWTC 1 cut(s) 1152
PfoI TCCNGGA 1 cut(s) 83
PinAI ACCGGT 7 cut(s) 102, 180, 258, 336, 414, 492, 570
PleI GAGTC 2 cut(s) 961, 1000
PpsI GAGTC 2 cut(s) 961, 1000
Psp6I CCWGG 6 cut(s) 207, 285, 363, 441, 519, 597
PspEI GGTNACC 6 cut(s) 95, 173, 251, 329, 485, 641
PspGI CCWGG 6 cut(s) 207, 285, 363, 441, 519, 597
PspPI GGNCC 7 cut(s) 105, 261, 339, 417, 495, 573, 661
RsaI GTAC 1 cut(s) 902
RsaNI GTAC 1 cut(s) 901
RseI CAYNNNNRTG 1 cut(s) 1002
Rsr2I CGGWCCG 6 cut(s) 105, 261, 339, 417, 495, 573
RsrII CGGWCCG 6 cut(s) 105, 261, 339, 417, 495, 573
SacII CCGCGG 1 cut(s) 633
SaqAI TTAA 1 cut(s) 1137
Sau3AI GATC 7 cut(s) 4, 58, 136, 214, 604, 774, 1112
Sau96I GGNCC 7 cut(s) 105, 261, 339, 417, 495, 573, 661
SchI GAGTC 2 cut(s) 962, 1001
ScrFI CCNGG 8 cut(s) 85, 209, 287, 365, 443, 521, 599, 678
Sfr303I CCGCGG 1 cut(s) 633
SgrBI CCGCGG 1 cut(s) 633
SinI GGWCC 6 cut(s) 105, 261, 339, 417, 495, 573
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 1 cut(s) 1136
SmoI CTYRAG 1 cut(s) 1136
SspMI CTAG 3 cut(s) 714, 786, 804
StyD4I CCNGG 8 cut(s) 83, 207, 285, 363, 441, 519, 597, 676
TaqI TCGA 2 cut(s) 749, 777
TaqII GACCGA 3 cut(s) 260, 416, 494
TauI GCSGC 8 cut(s) 228, 635, 765, 827, 912, 915, 918, 927
TfiI GAWTC 1 cut(s) 1152
Tru1I TTAA 1 cut(s) 1137
Tru9I TTAA 1 cut(s) 1137
TseFI GTSAC 8 cut(s) 95, 173, 241, 251, 329, 485, 563, 641
TseI GCWGC 5 cut(s) 686, 737, 800, 821, 906
Tsp45I GTSAC 8 cut(s) 95, 173, 241, 251, 329, 485, 563, 641
TspDTI ATGAA 5 cut(s) 309, 387, 465, 543, 767
Vha464I CTTAAG 1 cut(s) 1136
VpaK11BI GGWCC 6 cut(s) 105, 261, 339, 417, 495, 573
XceI RCATGY 1 cut(s) 686
XspI CTAG 3 cut(s) 714, 786, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.