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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1053 |
| AccII | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| AccIII | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| AclWI | GGATC | 2 cut(s) | 12, 1120 |
| AcoI | YGGCCR | 1 cut(s) | 70 |
| AfaI | GTAC | 1 cut(s) | 902 |
| AfeI | AGCGCT | 1 cut(s) | 820 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1052 |
| AflII | CTTAAG | 1 cut(s) | 1136 |
| AgeI | ACCGGT | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| AgsI | TTSAA | 1 cut(s) | 1159 |
| AhdI | GACNNNNNGTC | 7 cut(s) | 93, 171, 249, 327, 405, 483, 561 |
| AjnI | CCWGG | 6 cut(s) | 207, 285, 363, 441, 519, 597 |
| AluBI | AGCT | 4 cut(s) | 20, 706, 785, 841 |
| AluI | AGCT | 4 cut(s) | 20, 706, 785, 841 |
| Alw26I | GTCTC | 4 cut(s) | 960, 999, 1020, 1058 |
| AlwI | GGATC | 2 cut(s) | 12, 1120 |
| Aor13HI | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| Aor51HI | AGCGCT | 1 cut(s) | 820 |
| AoxI | GGCC | 3 cut(s) | 70, 661, 976 |
| ApeKI | GCWGC | 5 cut(s) | 686, 737, 800, 821, 906 |
| AsiGI | ACCGGT | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| AspLEI | GCGC | 2 cut(s) | 821, 829 |
| AspS9I | GGNCC | 7 cut(s) | 105, 261, 339, 417, 495, 573, 661 |
| AsuC2I | CCSGG | 2 cut(s) | 85, 678 |
| AsuHPI | GGTGA | 9 cut(s) | 89, 167, 245, 323, 404, 479, 635, 1060, 1139 |
| AvaII | GGWCC | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| AxyI | CCTNAGG | 1 cut(s) | 31 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BbvCI | CCTCAGC | 2 cut(s) | 636, 882 |
| BbvI | GCAGC | 5 cut(s) | 673, 749, 787, 808, 918 |
| BccI | CCATC | 1 cut(s) | 62 |
| BceAI | ACGGC | 2 cut(s) | 523, 919 |
| BciT130I | CCWGG | 6 cut(s) | 209, 287, 365, 443, 521, 599 |
| BciVI | GTATCC | 3 cut(s) | 341, 419, 497 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcnI | CCSGG | 2 cut(s) | 85, 678 |
| BcoDI | GTCTC | 4 cut(s) | 960, 999, 1020, 1058 |
| BfaI | CTAG | 3 cut(s) | 714, 786, 804 |
| BfoI | RGCGCY | 1 cut(s) | 822 |
| BfrI | CTTAAG | 1 cut(s) | 1136 |
| BfuI | GTATCC | 3 cut(s) | 341, 419, 497 |
| Bme1390I | CCNGG | 8 cut(s) | 85, 209, 287, 365, 443, 521, 599, 678 |
| Bme18I | GGWCC | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| BmeRI | GACNNNNNGTC | 7 cut(s) | 93, 171, 249, 327, 405, 483, 561 |
| BmgT120I | GGNCC | 7 cut(s) | 105, 261, 339, 417, 495, 573, 661 |
| BmrFI | CCNGG | 8 cut(s) | 85, 209, 287, 365, 443, 521, 599, 678 |
| BpmI | CTGGAG | 2 cut(s) | 207, 987 |
| Bpu10I | CCTNAGC | 4 cut(s) | 636, 815, 882, 1146 |
| BpuMI | CCSGG | 2 cut(s) | 85, 678 |
| BsaJI | CCNNGG | 5 cut(s) | 246, 402, 480, 630, 646 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1052 |
| Bse118I | RCCGGY | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| Bse21I | CCTNAGG | 1 cut(s) | 31 |
| BseAI | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| BseBI | CCWGG | 6 cut(s) | 209, 287, 365, 443, 521, 599 |
| BseDI | CCNNGG | 5 cut(s) | 246, 402, 480, 630, 646 |
| BseGI | GGATG | 4 cut(s) | 376, 529, 810, 1096 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1052 |
| BseMII | CTCAG | 7 cut(s) | 159, 315, 549, 627, 873, 942, 1160 |
| BseRI | GAGGAG | 7 cut(s) | 945, 984, 987, 1109, 1112, 1115, 1118 |
| BseXI | GCAGC | 5 cut(s) | 673, 749, 787, 808, 918 |
| BsgI | GTGCAG | 1 cut(s) | 672 |
| Bsh1236I | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| Bsh1285I | CGRYCG | 2 cut(s) | 402, 480 |
| BshFI | GGCC | 3 cut(s) | 72, 663, 978 |
| BshTI | ACCGGT | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| BsiEI | CGRYCG | 2 cut(s) | 402, 480 |
| BslFI | GGGAC | 8 cut(s) | 56, 100, 134, 290, 368, 446, 602, 693 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1052 |
| BsmAI | GTCTC | 4 cut(s) | 960, 999, 1020, 1058 |
| BsmBI | CGTCTC | 1 cut(s) | 1020 |
| BsmFI | GGGAC | 8 cut(s) | 56, 100, 134, 290, 368, 446, 602, 693 |
| BsnI | GGCC | 3 cut(s) | 72, 663, 978 |
| Bsp13I | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| Bsp143I | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| BspANI | GGCC | 3 cut(s) | 72, 663, 978 |
| BspCNI | CTCAG | 7 cut(s) | 160, 316, 550, 628, 874, 943, 1159 |
| BspEI | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| BspFNI | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| BspPI | GGATC | 2 cut(s) | 12, 1120 |
| BspTI | CTTAAG | 1 cut(s) | 1136 |
| BsrBI | CCGCTC | 1 cut(s) | 1053 |
| BsrFI | RCCGGY | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| BssAI | RCCGGY | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| BssECI | CCNNGG | 5 cut(s) | 246, 402, 480, 630, 646 |
| BssMI | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| Bst2UI | CCWGG | 6 cut(s) | 209, 287, 365, 443, 521, 599 |
| Bst6I | CTCTTC | 4 cut(s) | 31, 952, 991, 1018 |
| BstAFI | CTTAAG | 1 cut(s) | 1136 |
| BstC8I | GCNNGC | 1 cut(s) | 704 |
| BstDSI | CCRYGG | 2 cut(s) | 630, 646 |
| BstEII | GGTNACC | 6 cut(s) | 95, 173, 251, 329, 485, 641 |
| BstF5I | GGATG | 4 cut(s) | 376, 529, 810, 1096 |
| BstFNI | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| BstH2I | RGCGCY | 1 cut(s) | 822 |
| BstHHI | GCGC | 2 cut(s) | 821, 829 |
| BstKTI | GATC | 7 cut(s) | 7, 61, 139, 217, 607, 777, 1115 |
| BstMAI | GTCTC | 4 cut(s) | 960, 999, 1020, 1058 |
| BstMBI | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| BstMCI | CGRYCG | 2 cut(s) | 402, 480 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 737, 912, 915, 921, 924 |
| BstNI | CCWGG | 6 cut(s) | 209, 287, 365, 443, 521, 599 |
| BstNSI | RCATGY | 1 cut(s) | 686 |
| BstPI | GGTNACC | 6 cut(s) | 95, 173, 251, 329, 485, 641 |
| BstSCI | CCNGG | 8 cut(s) | 83, 207, 285, 363, 441, 519, 597, 676 |
| BstUI | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| BstV1I | GCAGC | 5 cut(s) | 673, 749, 787, 808, 918 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 185, 727 |
| Bsu36I | CCTNAGG | 1 cut(s) | 31 |
| BsuI | GTATCC | 3 cut(s) | 341, 419, 497 |
| BsuRI | GGCC | 3 cut(s) | 72, 663, 978 |
| BtgI | CCRYGG | 2 cut(s) | 630, 646 |
| BtsCI | GGATG | 4 cut(s) | 376, 529, 810, 1096 |
| Cac8I | GCNNGC | 1 cut(s) | 704 |
| CfoI | GCGC | 2 cut(s) | 821, 829 |
| Cfr10I | RCCGGY | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| Cfr13I | GGNCC | 7 cut(s) | 105, 261, 339, 417, 495, 573, 661 |
| Cfr42I | CCGCGG | 1 cut(s) | 633 |
| CpoI | CGGWCCG | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| Csp6I | GTAC | 1 cut(s) | 901 |
| CspAI | ACCGGT | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| CspI | CGGWCCG | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| CviAII | CATG | 4 cut(s) | 683, 1004, 1061, 1079 |
| CviQI | GTAC | 1 cut(s) | 901 |
| DpnI | GATC | 7 cut(s) | 6, 60, 138, 216, 606, 776, 1114 |
| DpnII | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| DriI | GACNNNNNGTC | 7 cut(s) | 93, 171, 249, 327, 405, 483, 561 |
| EaeI | YGGCCR | 1 cut(s) | 70 |
| Eam1104I | CTCTTC | 4 cut(s) | 31, 952, 991, 1018 |
| Eam1105I | GACNNNNNGTC | 7 cut(s) | 93, 171, 249, 327, 405, 483, 561 |
| EarI | CTCTTC | 4 cut(s) | 31, 952, 991, 1018 |
| EciI | GGCGGA | 3 cut(s) | 746, 933, 942 |
| Eco47I | GGWCC | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| Eco47III | AGCGCT | 1 cut(s) | 820 |
| Eco81I | CCTNAGG | 1 cut(s) | 31 |
| Eco91I | GGTNACC | 6 cut(s) | 95, 173, 251, 329, 485, 641 |
| EcoO65I | GGTNACC | 6 cut(s) | 95, 173, 251, 329, 485, 641 |
| EcoRII | CCWGG | 6 cut(s) | 207, 285, 363, 441, 519, 597 |
| Esp3I | CGTCTC | 1 cut(s) | 1020 |
| FaeI | CATG | 4 cut(s) | 686, 1007, 1064, 1082 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 843, 875 |
| FaqI | GGGAC | 8 cut(s) | 56, 100, 134, 290, 368, 446, 602, 693 |
| FatI | CATG | 4 cut(s) | 682, 1003, 1060, 1078 |
| FauI | CCCGC | 1 cut(s) | 758 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FokI | GGATG | 4 cut(s) | 383, 536, 797, 1103 |
| FspBI | CTAG | 3 cut(s) | 714, 786, 804 |
| GlaI | GCGC | 2 cut(s) | 820, 828 |
| GsuI | CTGGAG | 2 cut(s) | 207, 987 |
| HaeII | RGCGCY | 1 cut(s) | 822 |
| HaeIII | GGCC | 3 cut(s) | 72, 663, 978 |
| HhaI | GCGC | 2 cut(s) | 821, 829 |
| Hin1II | CATG | 4 cut(s) | 686, 1007, 1064, 1082 |
| Hin6I | GCGC | 2 cut(s) | 819, 827 |
| HinP1I | GCGC | 2 cut(s) | 819, 827 |
| HinfI | GANTC | 3 cut(s) | 953, 992, 1152 |
| HphI | GGTGA | 9 cut(s) | 89, 167, 245, 323, 404, 479, 635, 1060, 1139 |
| Hpy188I | TCNGA | 3 cut(s) | 796, 952, 991 |
| Hpy188III | TCNNGA | 9 cut(s) | 108, 186, 264, 342, 420, 498, 576, 966, 1156 |
| Hpy99I | CGWCG | 3 cut(s) | 56, 697, 700 |
| HpyAV | CCTTC | 3 cut(s) | 848, 870, 1009 |
| HpyCH4V | TGCA | 1 cut(s) | 689 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 737, 912, 915, 921, 924 |
| Hsp92II | CATG | 4 cut(s) | 686, 1007, 1064, 1082 |
| HspAI | GCGC | 2 cut(s) | 819, 827 |
| Kpn2I | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| KspI | CCGCGG | 1 cut(s) | 633 |
| Kzo9I | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| Lsp1109I | GCAGC | 5 cut(s) | 673, 749, 787, 808, 918 |
| MaeI | CTAG | 3 cut(s) | 714, 786, 804 |
| MalI | GATC | 7 cut(s) | 6, 60, 138, 216, 606, 776, 1114 |
| MbiI | CCGCTC | 1 cut(s) | 1053 |
| MboI | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| MboII | GAAGA | 8 cut(s) | 18, 302, 614, 738, 939, 978, 1035, 1084 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 2 cut(s) | 962, 1001 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MroI | TCCGGA | 6 cut(s) | 107, 263, 341, 419, 497, 575 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MseI | TTAA | 1 cut(s) | 1137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1002 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 2 cut(s) | 632, 909 |
| MspCI | CTTAAG | 1 cut(s) | 1136 |
| MspR9I | CCNGG | 8 cut(s) | 85, 209, 287, 365, 443, 521, 599, 678 |
| MvaI | CCWGG | 6 cut(s) | 209, 287, 365, 443, 521, 599 |
| MvnI | CGCG | 7 cut(s) | 164, 320, 398, 476, 554, 632, 827 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 737, 912, 915, 921, 924 |
| NciI | CCSGG | 2 cut(s) | 85, 678 |
| NdeII | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| NlaIII | CATG | 4 cut(s) | 686, 1007, 1064, 1082 |
| NmuCI | GTSAC | 8 cut(s) | 95, 173, 241, 251, 329, 485, 563, 641 |
| NspI | RCATGY | 1 cut(s) | 686 |
| PfeI | GAWTC | 1 cut(s) | 1152 |
| PfoI | TCCNGGA | 1 cut(s) | 83 |
| PinAI | ACCGGT | 7 cut(s) | 102, 180, 258, 336, 414, 492, 570 |
| PleI | GAGTC | 2 cut(s) | 961, 1000 |
| PpsI | GAGTC | 2 cut(s) | 961, 1000 |
| Psp6I | CCWGG | 6 cut(s) | 207, 285, 363, 441, 519, 597 |
| PspEI | GGTNACC | 6 cut(s) | 95, 173, 251, 329, 485, 641 |
| PspGI | CCWGG | 6 cut(s) | 207, 285, 363, 441, 519, 597 |
| PspPI | GGNCC | 7 cut(s) | 105, 261, 339, 417, 495, 573, 661 |
| RsaI | GTAC | 1 cut(s) | 902 |
| RsaNI | GTAC | 1 cut(s) | 901 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1002 |
| Rsr2I | CGGWCCG | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| RsrII | CGGWCCG | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| SacII | CCGCGG | 1 cut(s) | 633 |
| SaqAI | TTAA | 1 cut(s) | 1137 |
| Sau3AI | GATC | 7 cut(s) | 4, 58, 136, 214, 604, 774, 1112 |
| Sau96I | GGNCC | 7 cut(s) | 105, 261, 339, 417, 495, 573, 661 |
| SchI | GAGTC | 2 cut(s) | 962, 1001 |
| ScrFI | CCNGG | 8 cut(s) | 85, 209, 287, 365, 443, 521, 599, 678 |
| Sfr303I | CCGCGG | 1 cut(s) | 633 |
| SgrBI | CCGCGG | 1 cut(s) | 633 |
| SinI | GGWCC | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1002 |
| SmlI | CTYRAG | 1 cut(s) | 1136 |
| SmoI | CTYRAG | 1 cut(s) | 1136 |
| SspMI | CTAG | 3 cut(s) | 714, 786, 804 |
| StyD4I | CCNGG | 8 cut(s) | 83, 207, 285, 363, 441, 519, 597, 676 |
| TaqI | TCGA | 2 cut(s) | 749, 777 |
| TaqII | GACCGA | 3 cut(s) | 260, 416, 494 |
| TauI | GCSGC | 8 cut(s) | 228, 635, 765, 827, 912, 915, 918, 927 |
| TfiI | GAWTC | 1 cut(s) | 1152 |
| Tru1I | TTAA | 1 cut(s) | 1137 |
| Tru9I | TTAA | 1 cut(s) | 1137 |
| TseFI | GTSAC | 8 cut(s) | 95, 173, 241, 251, 329, 485, 563, 641 |
| TseI | GCWGC | 5 cut(s) | 686, 737, 800, 821, 906 |
| Tsp45I | GTSAC | 8 cut(s) | 95, 173, 241, 251, 329, 485, 563, 641 |
| TspDTI | ATGAA | 5 cut(s) | 309, 387, 465, 543, 767 |
| Vha464I | CTTAAG | 1 cut(s) | 1136 |
| VpaK11BI | GGWCC | 6 cut(s) | 105, 261, 339, 417, 495, 573 |
| XceI | RCATGY | 1 cut(s) | 686 |
| XspI | CTAG | 3 cut(s) | 714, 786, 804 |