Rh5CG365500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000749
Physical Location & Seq
Reverse (-)
44256794 .. 44258065
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG365500.1

Sequence Viewer

Length: 282 bp
ATGGCGCCGGAATTTTCCCAGGAACCAGTTGAAGATCAAAAATTGCGGGCTTCGTTCCATCGTCGTCCGTCAGGGTGCCGTAGATTCGAGGACAGGGCCGGATCGGATCCGGATTCGAGGAGACTAGGAGGTGCTGCTGGCCCGCCGTACTGGTGTCGTCGACCGTCGAGGAGACTAGGAGAGAGGTACAACAGTGAGTCTTTTGTTTATGATACTTTGTTTGATATGCTGCTGATTAGATATCAAGTGCTCAACAAACCAAGAGAGGACAACACCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.92

Weight (kDa)

9.18

Isoelectric Point (pI)

78.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 75
AccI GTMKAC 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 2 cut(s) 46, 143
AclWI GGATC 3 cut(s) 101, 109, 114
AcsI RAATTY 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 149, 188
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 115, 166
AlwI GGATC 3 cut(s) 101, 109, 114
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 2 cut(s) 96, 139
ApeKI GCWGC 2 cut(s) 134, 229
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 96, 140
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
BamHI GGATCC 1 cut(s) 106
BanI GGYRCC 2 cut(s) 4, 75
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 121, 216
BccI CCATC 1 cut(s) 66
BceAI ACGGC 2 cut(s) 63, 130
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 115, 166
BfaI CTAG 2 cut(s) 125, 176
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 135, 230
BlsI GCNGC 2 cut(s) 136, 231
Bme1390I CCNGG 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 96, 140
BmiI GGNNCC 4 cut(s) 6, 24, 77, 108
BmrFI CCNGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 26, 155
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 26, 155
BseRI GAGGAG 2 cut(s) 133, 184
BseXI GCAGC 2 cut(s) 121, 216
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 98, 141
BshNI GGYRCC 2 cut(s) 4, 75
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 8, 99, 110
BsmAI GTCTC 2 cut(s) 115, 166
BsnI GGCC 2 cut(s) 98, 141
Bsp1286I GDGCHC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 3 cut(s) 34, 101, 106
BspACI CCGC 2 cut(s) 46, 143
BspANI GGCC 2 cut(s) 98, 141
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 4 cut(s) 6, 24, 77, 108
BspPI GGATC 3 cut(s) 101, 109, 114
BspT107I GGYRCC 2 cut(s) 4, 75
BsrI ACTGG 2 cut(s) 26, 155
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 3 cut(s) 34, 101, 106
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 165, 194
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 48, 139, 143
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 37, 104, 109
BstMAI GTCTC 2 cut(s) 115, 166
BstMBI GATC 3 cut(s) 34, 101, 106
BstMCI CGRYCG 1 cut(s) 164
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 121, 216
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 98, 141
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 48, 139, 143
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 96, 140
Csp6I GTAC 2 cut(s) 148, 187
CviJI RGCY 3 cut(s) 50, 98, 141
CviKI_1 RGCY 3 cut(s) 50, 98, 141
CviQI GTAC 2 cut(s) 148, 187
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 36, 103, 108
DpnII GATC 3 cut(s) 34, 101, 106
Eco32I GATATC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 242
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaiI YATR 3 cut(s) 210, 227, 280
FauI CCCGC 2 cut(s) 39, 150
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 135, 230
Fsp4HI GCNGC 2 cut(s) 135, 230
FspBI CTAG 2 cut(s) 125, 176
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 135, 230
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 98, 141
HapII CCGG 3 cut(s) 8, 99, 110
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HinfI GANTC 3 cut(s) 84, 113, 197
HpaII CCGG 3 cut(s) 8, 99, 110
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 3 cut(s) 66, 162, 169
HpyCH4III ACNGT 2 cut(s) 165, 194
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 34, 101, 106
Lsp1109I GCAGC 2 cut(s) 121, 216
MaeI CTAG 2 cut(s) 125, 176
MalI GATC 3 cut(s) 36, 103, 108
MboI GATC 3 cut(s) 34, 101, 106
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 11, 41
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 6 cut(s) 82, 111, 122, 162, 177, 259
MroI TCCGGA 1 cut(s) 109
MspI CCGG 3 cut(s) 8, 99, 110
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 34, 101, 106
NlaIV GGNNCC 4 cut(s) 6, 24, 77, 108
PfeI GAWTC 2 cut(s) 84, 113
PkrI GCNGC 2 cut(s) 136, 231
PleI GAGTC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 6, 24, 77, 108
PspPI GGNCC 2 cut(s) 96, 140
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 2 cut(s) 149, 188
RsaNI GTAC 2 cut(s) 148, 187
SalI GTCGAC 1 cut(s) 159
SatI GCNGC 2 cut(s) 135, 230
Sau3AI GATC 3 cut(s) 34, 101, 106
Sau96I GGNCC 2 cut(s) 96, 140
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 133, 188, 278
SfoI GGCGCC 1 cut(s) 6
Sse9I AATT 2 cut(s) 11, 41
SsiI CCGC 2 cut(s) 46, 143
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 125, 176
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 165, 194
TaqI TCGA 4 cut(s) 87, 116, 160, 167
TasI AATT 2 cut(s) 11, 41
TfiI GAWTC 2 cut(s) 84, 113
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 134, 229
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 2 cut(s) 125, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.