Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

13583624 .. 13592606

Gene Structure 8983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTCAACAACTTGGGTGTTTCAAGAGCGCTGGTTGAAAATTCCAGAACCTTACTACTGCCTACACATATGCATGAGAGGTTAGGGTTACTCAAAAATGCAAAAGTTAGATTGGAAGAGAAACGAATAACTCCATCTATCGATAGGATTGCAGAAAGCCTGAATATGTCCAAAAAGAAAGTTAGGAAGTTACTCAGGTATCAAGTGCTCGACAAACCAAGAGAGGCCAACACCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

79

Amino Acids

9.15

Weight (kDa)

10.72

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r3	PF04539	26 - 66	1.7e-06	Sigma-70 region 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AfeI	AGCGCT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	24, 38
Alw21I	GWGCWC	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	31
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BfoI	RGCGCY	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	141
CfoI	GCGC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	141
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	2 cut(s)	159, 227
CviKI_1	RGCY	2 cut(s)	159, 227
DdeI	CTNAG	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco47III	AGCGCT	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	75
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	69, 71, 75, 167, 238
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	24, 45
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	73, 101, 152
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	29
LpnPI	CCDG	4 cut(s)	17, 58, 173, 181
MaeIII	GTNAC	2 cut(s)	87, 189
MboII	GAAGA	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	2 cut(s)	72, 217
Mph1103I	ATGCAT	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	53, 83, 200, 236
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	141, 210
TasI	AATT	1 cut(s)	40
XapI	RAATTY	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.