Rroxscaffold_7G00197900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000749
Physical Location & Seq
Forward (+)
42593774 .. 42594318
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197900.1

Sequence Viewer

Length: 462 bp
ATGGAGGAAGGTGCGGTGGCCGCATCCGGATCCGAGGCGTGGATGAGGATTGAGACCGGTCCGGCGTTGGATCTTAGTCGGATTGGGGAGGCGTCTTGCGCCCGTCGGAAGATCCATGGGTTGTGGGTGTTTGGATCTACGGAGGTGCGCGAGGACGAGCGAGTGCCGGGGAGCGCTGGTCCTAGGGATCCGACACCGGTGAGGGAGCGGCAGGAGTGGTGGGGAAACGACGGTGCGGATGCGGCGGGTGACGTGGGTCATCGGCGTGGTGTGATTTGCCGGTGGGGCACGATTTTGCGGCGGCAGCCTTGGTGGATCGCGATGCGCCTTGGTGGATTGTGGCGCCGGAGTCTTGCGGGGAGTGGTGGTTGGGCGGGCTTTTGTGTTAGGGCCCGACTATTTCTGTGTTGCGCAGTCAATAAGTCCCTATTCGTTAGGGTAGTTGTCATGGATTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

9.72

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 208
AccII CGCG 2 cut(s) 150, 320
AccIII TCCGGA 1 cut(s) 26
AclWI GGATC 8 cut(s) 24, 37, 78, 106, 142, 182, 195, 323
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 92, 343
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 39
AgeI ACCGGT 2 cut(s) 56, 196
AjiI CACGTC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 8 cut(s) 24, 37, 78, 106, 142, 182, 195, 323
Aor13HI TCCGGA 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 2 cut(s) 18, 390
ApaI GGGCCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 304
AsiGI ACCGGT 2 cut(s) 56, 196
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 6 cut(s) 101, 150, 176, 327, 345, 413
AspS9I GGNCC 4 cut(s) 59, 179, 390, 391
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 211, 260
AvaII GGWCC 2 cut(s) 59, 179
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 2 cut(s) 290, 394
BamHI GGATCC 2 cut(s) 29, 187
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 177, 346
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 6 cut(s) 21, 209, 243, 299, 302, 305
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 6 cut(s) 22, 210, 244, 300, 303, 306
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 59, 179
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 59, 179, 390, 391
BmiI GGNNCC 4 cut(s) 31, 189, 344, 392
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 32, 229, 312
BoxI GACNNNNGTC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 168
BsaHI GRCGYC 2 cut(s) 92, 343
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 6 cut(s) 33, 115, 167, 182, 308, 328
BsaWI WCCGGW 3 cut(s) 26, 56, 196
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse118I RCCGGY 3 cut(s) 56, 196, 279
BseAI TCCGGA 1 cut(s) 26
BseDI CCNNGG 6 cut(s) 33, 115, 167, 182, 308, 328
BseGI GGATG 3 cut(s) 23, 48, 244
BseLI CCNNNNNNNGG 1 cut(s) 39
BseSI GKGCMC 2 cut(s) 290, 394
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 150, 320
BshFI GGCC 2 cut(s) 20, 392
BshNI GGYRCC 1 cut(s) 342
BshTI ACCGGT 2 cut(s) 56, 196
BsiSI CCGG 7 cut(s) 27, 57, 62, 167, 197, 280, 346
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 20, 392
Bso31I GGTCTC 1 cut(s) 47
Bsp120I GGGCCC 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 290, 394
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 6 cut(s) 29, 70, 111, 134, 187, 315
Bsp19I CCATGG 1 cut(s) 115
Bsp68I TCGCGA 1 cut(s) 320
BspANI GGCC 2 cut(s) 20, 392
BspEI TCCGGA 1 cut(s) 26
BspFNI CGCG 2 cut(s) 150, 320
BspLI GGNNCC 4 cut(s) 31, 189, 344, 392
BspPI GGATC 8 cut(s) 24, 37, 78, 106, 142, 182, 195, 323
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 3 cut(s) 56, 196, 279
BssAI RCCGGY 3 cut(s) 56, 196, 279
BssECI CCNNGG 6 cut(s) 33, 115, 167, 182, 308, 328
BssMI GATC 6 cut(s) 29, 70, 111, 134, 187, 315
BssNI GRCGYC 2 cut(s) 92, 343
BssT1I CCWWGG 4 cut(s) 115, 182, 308, 328
Bst4CI ACNGT 1 cut(s) 233
BstACI GRCGYC 2 cut(s) 92, 343
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 23, 48, 244
BstFNI CGCG 2 cut(s) 150, 320
BstH2I RGCGCY 2 cut(s) 177, 346
BstHHI GCGC 6 cut(s) 101, 150, 176, 327, 345, 413
BstKTI GATC 6 cut(s) 32, 73, 114, 137, 190, 318
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 6 cut(s) 29, 70, 111, 134, 187, 315
BstMWI GCNNNNNNNGC 5 cut(s) 20, 98, 242, 285, 304
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 2 cut(s) 290, 394
BstUI CGCG 2 cut(s) 150, 320
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 5 cut(s) 29, 70, 111, 134, 187
BstYI RGATCY 5 cut(s) 29, 70, 111, 134, 187
BsuRI GGCC 2 cut(s) 20, 392
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 335
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 3 cut(s) 23, 48, 244
BtuMI TCGCGA 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 6 cut(s) 101, 150, 176, 327, 345, 413
Cfr10I RCCGGY 3 cut(s) 56, 196, 279
Cfr13I GGNCC 4 cut(s) 59, 179, 390, 391
CpoI CGGWCCG 1 cut(s) 59
CseI GACGC 1 cut(s) 81
CspAI ACCGGT 2 cut(s) 56, 196
CspI CGGWCCG 1 cut(s) 59
CviAII CATG 2 cut(s) 116, 448
CviJI RGCY 4 cut(s) 20, 307, 378, 392
CviKI_1 RGCY 4 cut(s) 20, 307, 378, 392
DdeI CTNAG 1 cut(s) 74
DinI GGCGCC 1 cut(s) 344
DpnI GATC 6 cut(s) 31, 72, 113, 136, 189, 317
DpnII GATC 6 cut(s) 29, 70, 111, 134, 187, 315
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 4 cut(s) 115, 182, 308, 328
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 59, 179
Eco47III AGCGCT 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 390
EcoT14I CCWWGG 4 cut(s) 115, 182, 308, 328
EcoT38I GRGCYC 1 cut(s) 394
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 4 cut(s) 115, 182, 308, 328
FaeI CATG 2 cut(s) 119, 451
FaiI YATR 2 cut(s) 117, 449
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 115, 447
FauI CCCGC 3 cut(s) 238, 349, 367
Fnu4HI GCNGC 6 cut(s) 21, 209, 243, 299, 302, 305
FokI GGATG 3 cut(s) 10, 55, 251
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 6 cut(s) 21, 209, 243, 299, 302, 305
FspBI CTAG 1 cut(s) 183
FspI TGCGCA 1 cut(s) 412
GlaI GCGC 6 cut(s) 100, 149, 175, 326, 344, 412
GluI GCNGC 6 cut(s) 21, 209, 243, 299, 302, 305
HaeII RGCGCY 2 cut(s) 177, 346
HaeIII GGCC 2 cut(s) 20, 392
HapII CCGG 7 cut(s) 27, 57, 62, 167, 197, 280, 346
HgaI GACGC 1 cut(s) 81
HhaI GCGC 6 cut(s) 101, 150, 176, 327, 345, 413
Hin1I GRCGYC 2 cut(s) 92, 343
Hin1II CATG 2 cut(s) 119, 451
Hin6I GCGC 6 cut(s) 99, 148, 174, 325, 343, 411
HinP1I GCGC 6 cut(s) 99, 148, 174, 325, 343, 411
HinfI GANTC 2 cut(s) 349, 452
HpaII CCGG 7 cut(s) 27, 57, 62, 167, 197, 280, 346
HphI GGTGA 2 cut(s) 211, 260
Hpy188I TCNGA 4 cut(s) 34, 81, 108, 192
Hpy188III TCNNGA 3 cut(s) 27, 319, 456
Hpy99I CGWCG 2 cut(s) 108, 233
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 98, 242, 285, 304
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 2 cut(s) 92, 343
Hsp92II CATG 2 cut(s) 119, 451
HspAI GCGC 6 cut(s) 99, 148, 174, 325, 343, 411
KasI GGCGCC 1 cut(s) 342
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 6 cut(s) 29, 70, 111, 134, 187, 315
LmnI GCTCC 2 cut(s) 171, 205
LpnPI CCDG 9 cut(s) 40, 70, 75, 162, 180, 197, 210, 293, 359
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 3 cut(s) 32, 229, 312
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 248
MalI GATC 6 cut(s) 31, 72, 113, 136, 189, 317
MbiI CCGCTC 1 cut(s) 208
MboI GATC 6 cut(s) 29, 70, 111, 134, 187, 315
MboII GAAGA 1 cut(s) 121
MflI RGATCY 5 cut(s) 29, 70, 111, 134, 187
MhlI GDGCHC 2 cut(s) 290, 394
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 4 cut(s) 48, 59, 86, 215
MnlI CCTC 6 cut(s) 28, 39, 82, 136, 145, 195
MroI TCCGGA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 7 cut(s) 27, 57, 62, 167, 197, 280, 346
MspR9I CCNGG 1 cut(s) 168
MvnI CGCG 2 cut(s) 150, 320
MwoI GCNNNNNNNGC 5 cut(s) 20, 98, 242, 285, 304
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 1 cut(s) 115
NdeII GATC 6 cut(s) 29, 70, 111, 134, 187, 315
NlaIII CATG 2 cut(s) 119, 451
NlaIV GGNNCC 4 cut(s) 31, 189, 344, 392
NmuCI GTSAC 1 cut(s) 248
NruI TCGCGA 1 cut(s) 320
NsbI TGCGCA 1 cut(s) 412
PfeI GAWTC 1 cut(s) 452
PinAI ACCGGT 2 cut(s) 56, 196
PkrI GCNGC 6 cut(s) 22, 210, 244, 300, 303, 306
PleI GAGTC 1 cut(s) 357
PluTI GGCGCC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 357
PshAI GACNNNNGTC 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 31, 189, 344, 392
PspOMI GGGCCC 1 cut(s) 390
PspPI GGNCC 4 cut(s) 59, 179, 390, 391
PsuI RGATCY 5 cut(s) 29, 70, 111, 134, 187
RruI TCGCGA 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 264
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SatI GCNGC 6 cut(s) 21, 209, 243, 299, 302, 305
Sau3AI GATC 6 cut(s) 29, 70, 111, 134, 187, 315
Sau96I GGNCC 4 cut(s) 59, 179, 390, 391
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 290, 394
SetI ASST 3 cut(s) 13, 147, 255
SfaNI GCATC 3 cut(s) 32, 229, 312
SfoI GGCGCC 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 196
SinI GGWCC 2 cut(s) 59, 179
SmiMI CAYNNNNRTG 1 cut(s) 264
SspDI GGCGCC 1 cut(s) 342
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 4 cut(s) 115, 182, 308, 328
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 457
TauI GCSGC 5 cut(s) 23, 211, 245, 301, 304
TfiI GAWTC 1 cut(s) 452
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 59, 179
XmaJI CCTAGG 1 cut(s) 182
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.