RLG00000020620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000749
Physical Location & Seq
Forward (+)
66792970 .. 66793645
676 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020620

Sequence Viewer

Length: 588 bp
ATGCCCCGTCCGGCGGCGTGTCCTTGGGGTGTCGTCATCGGATGGGCTTGTGTTGGTTCTCCACTCCGGCGAGAGCTTATGGCTGAGACGTGGCCAAGGGCAGGATGGGTTGCCTATCGTAGGATTGTTTCCATTGCTCGGAGGTCGGGGTCGGAGGGAGCGTTTCCTCATCTTTCTCAGGGTTCAAAGGTGGCTGCATCTGGATCTGCGGCGTGGCTAGGGATTGAGACCGGACCAGCGTTGGATTTTCGTCAGATCGGGGAGGCGTACTGCGCCCGGTGGATGGTGTGGAGGGATCTACGGTGTGCTGTTTCGGATTGGTGGATCGACGGCGGCCCTCTGTTGCTTGATTCGGTTCCTAACGTTGTCCCATGGGTTTCGAGTGGTAGGGTCGACGGAGGTGTGCGAGGACTGGCTGGTGGAGGAGCGCTGGACCTGGGGATCCGATGCTGGTGGTGGAGCGGCAGGACTGGTGGGGTAGCGATGGTGCAGGTACAGTGGCTGACGTGGGCCGTGAGGGAGGTGCATATGCTTCTTGCTGGGCAGGATTTTTGGGCCCATGTTGTAATTGCAGTTTCAAACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.28

Weight (kDa)

9.06

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 393
AciI CCGC 4 cut(s) 14, 209, 333, 462
AclI AACGTT 1 cut(s) 363
AclWI GGATC 5 cut(s) 211, 303, 332, 436, 449
AcoI YGGCCR 1 cut(s) 92
AfaI GTAC 2 cut(s) 269, 495
AfeI AGCGCT 1 cut(s) 429
AfiI CCNNNNNNNGG 5 cut(s) 13, 101, 120, 138, 283
AgsI TTSAA 2 cut(s) 186, 579
AjiI CACGTC 2 cut(s) 90, 507
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 80, 221
AlwI GGATC 5 cut(s) 211, 303, 332, 436, 449
AlwNI CAGNNNCTG 1 cut(s) 502
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 4 cut(s) 92, 334, 510, 555
ApaI GGGCCC 1 cut(s) 559
ApeKI GCWGC 1 cut(s) 194
AspLEI GCGC 2 cut(s) 275, 430
AspS9I GGNCC 6 cut(s) 233, 335, 433, 510, 555, 556
AsuC2I CCSGG 1 cut(s) 277
AvaII GGWCC 2 cut(s) 233, 433
BaeGI GKGCMC 1 cut(s) 559
BalI TGGCCA 1 cut(s) 94
BamHI GGATCC 1 cut(s) 441
BanII GRGCYC 1 cut(s) 559
BbvI GCAGC 1 cut(s) 181
BccI CCATC 4 cut(s) 36, 99, 277, 478
BceAI ACGGC 2 cut(s) 346, 497
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 80, 221
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 5 cut(s) 15, 195, 210, 334, 463
BlsI GCNGC 5 cut(s) 16, 196, 211, 335, 464
Bme1390I CCNGG 2 cut(s) 277, 437
Bme18I GGWCC 2 cut(s) 233, 433
BmgBI CACGTC 2 cut(s) 90, 507
BmgT120I GGNCC 6 cut(s) 233, 335, 433, 510, 555, 556
BmiI GGNNCC 3 cut(s) 357, 443, 557
BmrFI CCNGG 2 cut(s) 277, 437
BmsI GCATC 2 cut(s) 206, 437
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 23, 95, 371, 436
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 101, 120, 138, 283
Bse1I ACTGG 2 cut(s) 417, 475
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 23, 95, 371, 436
BseGI GGATG 3 cut(s) 47, 110, 288
BseLI CCNNNNNNNGG 5 cut(s) 13, 101, 120, 138, 283
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 75, 191
BseNI ACTGG 2 cut(s) 417, 475
BseRI GAGGAG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 4 cut(s) 94, 336, 512, 557
BsiSI CCGG 4 cut(s) 11, 67, 231, 277
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 5 cut(s) 13, 101, 120, 138, 283
BsmAI GTCTC 2 cut(s) 80, 221
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 4 cut(s) 94, 336, 512, 557
Bso31I GGTCTC 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 5 cut(s) 203, 255, 295, 324, 441
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 4 cut(s) 14, 209, 333, 462
BspANI GGCC 4 cut(s) 94, 336, 512, 557
BspCNI CTCAG 2 cut(s) 76, 190
BspLI GGNNCC 3 cut(s) 357, 443, 557
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 5 cut(s) 211, 303, 332, 436, 449
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 417, 475
BssECI CCNNGG 4 cut(s) 23, 95, 371, 436
BssMI GATC 5 cut(s) 203, 255, 295, 324, 441
BssT1I CCWWGG 3 cut(s) 23, 95, 371
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 2 cut(s) 303, 498
BstDEI CTNAG 2 cut(s) 84, 177
BstDSI CCRYGG 1 cut(s) 371
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 47, 110, 288
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 275, 430
BstKTI GATC 5 cut(s) 206, 258, 298, 327, 444
BstMAI GTCTC 2 cut(s) 80, 221
BstMBI GATC 5 cut(s) 203, 255, 295, 324, 441
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 275, 435
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 3 cut(s) 203, 295, 441
BstYI RGATCY 3 cut(s) 203, 295, 441
BsuRI GGCC 4 cut(s) 94, 336, 512, 557
BtgI CCRYGG 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 497
BtrI CACGTC 2 cut(s) 90, 507
BtsCI GGATG 3 cut(s) 47, 110, 288
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 502
CfoI GCGC 2 cut(s) 275, 430
Cfr13I GGNCC 6 cut(s) 233, 335, 433, 510, 555, 556
Csp6I GTAC 2 cut(s) 268, 494
CviAII CATG 2 cut(s) 372, 560
CviQI GTAC 2 cut(s) 268, 494
DdeI CTNAG 2 cut(s) 84, 177
DpnI GATC 5 cut(s) 205, 257, 297, 326, 443
DpnII GATC 5 cut(s) 203, 255, 295, 324, 441
EaeI YGGCCR 1 cut(s) 92
Eco130I CCWWGG 3 cut(s) 23, 95, 371
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 233, 433
Eco47III AGCGCT 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 3 cut(s) 23, 95, 371
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 3 cut(s) 23, 95, 371
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 2 cut(s) 375, 563
FaiI YATR 5 cut(s) 80, 373, 528, 530, 561
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 371, 559
FauNDI CATATG 1 cut(s) 528
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 15, 195, 210, 334, 463
FokI GGATG 3 cut(s) 54, 117, 295
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 5 cut(s) 15, 195, 210, 334, 463
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 274, 429
GluI GCNGC 5 cut(s) 15, 195, 210, 334, 463
GsaI CCCAGC 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 4 cut(s) 94, 336, 512, 557
HapII CCGG 4 cut(s) 11, 67, 231, 277
HhaI GCGC 2 cut(s) 275, 430
Hin1II CATG 2 cut(s) 375, 563
Hin6I GCGC 2 cut(s) 273, 428
HinP1I GCGC 2 cut(s) 273, 428
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 350
HpaII CCGG 4 cut(s) 11, 67, 231, 277
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 6 cut(s) 41, 141, 154, 255, 316, 446
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 2 cut(s) 332, 398
HpyCH4III ACNGT 2 cut(s) 303, 498
HpyCH4IV ACGT 3 cut(s) 89, 363, 506
HpyCH4V TGCA 4 cut(s) 197, 490, 526, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 84, 177
HpySE526I ACGT 3 cut(s) 89, 363, 506
Hsp92II CATG 2 cut(s) 375, 563
HspAI GCGC 2 cut(s) 273, 428
Kzo9I GATC 5 cut(s) 203, 255, 295, 324, 441
LmnI GCTCC 3 cut(s) 158, 425, 459
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 206, 437
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 89, 363, 506
MalI GATC 5 cut(s) 205, 257, 297, 326, 443
MbiI CCGCTC 1 cut(s) 462
MboI GATC 5 cut(s) 203, 255, 295, 324, 441
MflI RGATCY 3 cut(s) 203, 295, 441
MhlI GDGCHC 1 cut(s) 559
MlsI TGGCCA 1 cut(s) 94
MluCI AATT 1 cut(s) 567
MluNI TGGCCA 1 cut(s) 94
MmeI TCCRAC 2 cut(s) 132, 222
Mox20I TGGCCA 1 cut(s) 94
MscI TGGCCA 1 cut(s) 94
MseI TTAA 1 cut(s) 586
Msp20I TGGCCA 1 cut(s) 94
MspI CCGG 4 cut(s) 11, 67, 231, 277
MspR9I CCNGG 2 cut(s) 277, 437
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 371
NdeI CATATG 1 cut(s) 528
NdeII GATC 5 cut(s) 203, 255, 295, 324, 441
NlaIII CATG 2 cut(s) 375, 563
NlaIV GGNNCC 3 cut(s) 357, 443, 557
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 5 cut(s) 16, 196, 211, 335, 464
Psp1406I AACGTT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 357, 443, 557
PspOMI GGGCCC 1 cut(s) 555
PspPI GGNCC 6 cut(s) 233, 335, 433, 510, 555, 556
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 3 cut(s) 203, 295, 441
RsaI GTAC 2 cut(s) 269, 495
RsaNI GTAC 2 cut(s) 268, 494
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 5 cut(s) 15, 195, 210, 334, 463
Sau3AI GATC 5 cut(s) 203, 255, 295, 324, 441
Sau96I GGNCC 6 cut(s) 233, 335, 433, 510, 555, 556
ScrFI CCNGG 2 cut(s) 277, 437
SduI GDGCHC 1 cut(s) 559
SfaNI GCATC 2 cut(s) 206, 437
SinI GGWCC 2 cut(s) 233, 433
Sse9I AATT 1 cut(s) 567
SsiI CCGC 4 cut(s) 14, 209, 333, 462
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 275, 435
StyI CCWWGG 3 cut(s) 23, 95, 371
TaaI ACNGT 2 cut(s) 303, 498
TaiI ACGT 3 cut(s) 92, 366, 509
TaqI TCGA 3 cut(s) 327, 380, 393
TasI AATT 1 cut(s) 567
TauI GCSGC 4 cut(s) 17, 212, 336, 465
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 503
TseI GCWGC 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 233, 433
XagI CCTNNNNNAGG 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.