Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

20091402 .. 20091752

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG230100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGAGCGCGCCTACATCTTTCTCAGGTTTCGATGGTGGTTGCTTCTGGATCTGCGGCGTGGCTGGGGCTGGAGATCGCACCAGCGTTGGATTTCAGTAGGATCGAGGAGGCGTATTCCGCCGGTTGGATGGTGTGGAGGGATCTATGGTCTGCTGTTGCAGATCGGTGGATCGACGGCGGCCCTCTGCTGCTTGTTTCGGGTCCTGTCGTAGACTCTTGGGTTTCGGGTGGTAGCGTCTACGGTGGAGCGCGCGGGACGGCTAGCGGTGGAGCGTCGGACCTGGGGATCCGACGTTGGTGGTGGAGAGCTGGCATGGGGGGGCAGCGACGATGCAGGTACAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.6

Weight (kDa)

10.21

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	213, 240
AccII	CGCG	3 cut(s)	10, 253, 255
AciI	CCGC	5 cut(s)	56, 120, 180, 255, 267
AclWI	GGATC	6 cut(s)	58, 110, 150, 179, 283, 296
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	6 cut(s)	58, 110, 150, 179, 283, 296
AlwNI	CAGNNNCTG	1 cut(s)	348
AoxI	GGCC	2 cut(s)	181, 345
ApeKI	GCWGC	2 cut(s)	190, 325
AspLEI	GCGC	4 cut(s)	10, 12, 253, 255
AspS9I	GGNCC	4 cut(s)	182, 203, 280, 345
AsuNHI	GCTAGC	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	203, 280
BamHI	GGATCC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	177, 337
BccI	CCATC	2 cut(s)	28, 124
BceAI	ACGGC	2 cut(s)	193, 276
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	4 cut(s)	57, 181, 191, 326
BlsI	GCNGC	4 cut(s)	58, 182, 192, 327
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	2 cut(s)	203, 280
BmgT120I	GGNCC	4 cut(s)	182, 203, 280, 345
BmiI	GGNNCC	2 cut(s)	204, 290
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	323
BmtI	GCTAGC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	38
BsePI	GCGCGC	2 cut(s)	8, 251
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	177, 337
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	3 cut(s)	10, 253, 255
BshFI	GGCC	2 cut(s)	183, 347
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	183, 347
Bsp143I	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
BspACI	CCGC	5 cut(s)	56, 120, 180, 255, 267
BspANI	GGCC	2 cut(s)	183, 347
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	3 cut(s)	10, 253, 255
BspLI	GGNNCC	2 cut(s)	204, 290
BspMI	ACCTGC	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	6 cut(s)	58, 110, 150, 179, 283, 296
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	283
BssHII	GCGCGC	2 cut(s)	8, 251
BssMI	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	4 cut(s)	10, 253, 265, 313
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	3 cut(s)	10, 253, 255
BstHHI	GCGC	4 cut(s)	10, 12, 253, 255
BstKTI	GATC	7 cut(s)	53, 78, 105, 145, 166, 174, 291
BstMBI	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstUI	CGCG	3 cut(s)	10, 253, 255
BstV1I	GCAGC	2 cut(s)	177, 337
BstX2I	RGATCY	3 cut(s)	50, 142, 288
BstYI	RGATCY	3 cut(s)	50, 142, 288
BsuRI	GGCC	2 cut(s)	183, 347
BtsCI	GGATG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	4 cut(s)	10, 253, 265, 313
CaiI	CAGNNNCTG	1 cut(s)	348
CfoI	GCGC	4 cut(s)	10, 12, 253, 255
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	182, 203, 280, 345
CseI	GACGC	2 cut(s)	226, 264
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	6 cut(s)	64, 70, 183, 263, 311, 347
CviKI_1	RGCY	6 cut(s)	64, 70, 183, 263, 311, 347
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	7 cut(s)	52, 77, 104, 144, 165, 173, 290
DpnII	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
EciI	GGCGGA	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	203, 280
EcoO109I	RGGNCCY	2 cut(s)	203, 345
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	319
FaiI	YATR	2 cut(s)	148, 317
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	248
FblI	GTMKAC	2 cut(s)	213, 240
Fnu4HI	GCNGC	4 cut(s)	57, 181, 191, 326
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	4 cut(s)	57, 181, 191, 326
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	4 cut(s)	9, 11, 252, 254
GluI	GCNGC	4 cut(s)	57, 181, 191, 326
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	183, 347
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	2 cut(s)	226, 264
HhaI	GCGC	4 cut(s)	10, 12, 253, 255
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	4 cut(s)	8, 10, 251, 253
HinP1I	GCGC	4 cut(s)	8, 10, 251, 253
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	214, 241
Hpy188I	TCNGA	2 cut(s)	280, 293
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	214, 241
Hpy99I	CGWCG	4 cut(s)	179, 280, 297, 333
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	161, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	4 cut(s)	8, 10, 251, 253
Kzo9I	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
LmnI	GCTCC	2 cut(s)	248, 272
Lsp1109I	GCAGC	2 cut(s)	177, 337
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	295
MalI	GATC	7 cut(s)	52, 77, 104, 144, 165, 173, 290
MboI	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
MflI	RGATCY	3 cut(s)	50, 142, 288
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	4 cut(s)	69, 107, 258, 316
MnlI	CCTC	4 cut(s)	100, 103, 132, 195
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	3 cut(s)	10, 253, 255
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	204, 290
PauI	GCGCGC	2 cut(s)	8, 251
PkrI	GCNGC	4 cut(s)	58, 182, 192, 327
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	204, 290
PspPI	GGNCC	4 cut(s)	182, 203, 280, 345
PspPPI	RGGWCCY	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	348
PsuI	RGATCY	3 cut(s)	50, 142, 288
PteI	GCGCGC	2 cut(s)	8, 251
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SatI	GCNGC	4 cut(s)	57, 181, 191, 326
Sau3AI	GATC	7 cut(s)	50, 75, 102, 142, 163, 171, 288
Sau96I	GGNCC	4 cut(s)	182, 203, 280, 345
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	5 cut(s)	30, 285, 298, 313, 341
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	2 cut(s)	203, 280
SsiI	CCGC	5 cut(s)	56, 120, 180, 255, 267
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	3 cut(s)	32, 105, 174
TauI	GCSGC	2 cut(s)	59, 183
TseI	GCWGC	2 cut(s)	190, 325
VpaK11BI	GGWCC	2 cut(s)	203, 280
XmiI	GTMKAC	2 cut(s)	213, 240
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.