Rh1DG068600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000749
Physical Location & Seq
Forward (+)
12082707 .. 12084017
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG068600.1

Sequence Viewer

Length: 219 bp
ATGGTGCGATATGGATTTGATAATTTTGTTTTTCGTTTTGATTGGATCCAGTTTGTGATGAGACGATTGGGTTTAGAACAAGTAGAACAGGACCTTAGTGATTCGGAGGAGCATAAGAAGAGGGCTTTGAGTCTGGCTTTATTTAGGGCTGCTTACTCACAGACATTACTCTCTAGTCTGCTGTTGGAGGTTTTAGACTGTTATGCATCTGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.44

Weight (kDa)

5.18

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 53
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 40, 53
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 2 cut(s) 40, 53
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 91
CviJI RGCY 3 cut(s) 125, 137, 149
CviKI_1 RGCY 3 cut(s) 125, 137, 149
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 55
FaiI YATR 3 cut(s) 12, 114, 204
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 150
HinfI GANTC 2 cut(s) 101, 130
Hpy188I TCNGA 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 62, 74, 119
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 174
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 130
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 100, 114, 181
Mph1103I ATGCAT 1 cut(s) 208
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 208
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
PsuI RGATCY 1 cut(s) 45
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 139
SetI ASST 3 cut(s) 96, 192, 218
SfaNI GCATC 1 cut(s) 215
SgeI CNNG 5 cut(s) 61, 92, 101, 146, 186
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 200
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 101
TseI GCWGC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 91
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.