Rh5DG546500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000749
Physical Location & Seq
Forward (+)
83976224 .. 83979265
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG546500.1

Sequence Viewer

Length: 261 bp
ATGGAACTTACTGATTCGGCGGAGCACAAGAGAATGGCTTTGAGTCTGAGTTTATTTCAGGGTCTTTACTTACAGAGGTTGCTCTCTAGTAGAAGGGACTGTGGTGTTCTGATTTCTTCTTTTGGTGGATTTGGCGAGAGTGAGGATCGCAGGTTTGCCCATTTTGTTCTACTTTTGTCTTTTGTTAGCTCAGTTTTCAGTCGTTGTTGTGTCCTCATGAATTGCATGCAGTTTCTTAGCTTAACGTCTAGAGGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.66

Weight (kDa)

8.51

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 153
AluBI AGCT 2 cut(s) 189, 240
AluI AGCT 2 cut(s) 189, 240
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 27
BfaI CTAG 2 cut(s) 87, 249
BfuAI ACCTGC 1 cut(s) 141
BseMII CTCAG 2 cut(s) 38, 204
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 39, 203
BspHI TCATGA 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 153
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 47, 190, 236
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 229
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 216
CviAII CATG 2 cut(s) 217, 226
CviJI RGCY 4 cut(s) 38, 189, 240, 257
CviKI_1 RGCY 4 cut(s) 38, 189, 240, 257
DdeI CTNAG 3 cut(s) 47, 190, 236
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 35
FaeI CATG 2 cut(s) 220, 229
FaiI YATR 2 cut(s) 218, 227
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 216, 225
FspBI CTAG 2 cut(s) 87, 249
Hin1II CATG 2 cut(s) 220, 229
HinfI GANTC 2 cut(s) 14, 43
Hpy188I TCNGA 2 cut(s) 48, 111
Hpy188III TCNNGA 2 cut(s) 217, 249
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 225, 229
HpyF3I CTNAG 3 cut(s) 47, 190, 236
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 220, 229
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 2 cut(s) 44, 136
MaeI CTAG 2 cut(s) 87, 249
MaeII ACGT 1 cut(s) 245
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 4 cut(s) 69, 136, 224, 245
MseI TTAA 1 cut(s) 242
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 220, 229
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 216
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 242
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 80, 155, 191, 242, 248
SgeI CNNG 7 cut(s) 40, 71, 99, 148, 163, 229, 238
SphI GCATGC 1 cut(s) 229
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 87, 249
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 248
TasI AATT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 1 cut(s) 229
XspI CTAG 2 cut(s) 87, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.