RchiOBHm_Chr7g0243091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000749
Physical Location & Seq
Reverse (-)
69374711 .. 69375825
1115 bp
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UTR
Exon/CDS
Intron
PRQ21786

Sequence Viewer

Length: 153 bp
ATGAACGAGTCGGAGGCAAGGAGAAGTCGGACTCTCATGATCTTTTCCTCTCGTCCGGCGGCGATCGACAACGGCGTTGGCGGTTTCTGTCTCGCTGTTGATGTATCGTTTGCCGGACGGGAATGGTTTTGGGCTAGTACCCTATTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.5

Weight (kDa)

6.04

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 81
AfaI GTAC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 56, 114
BsmAI GTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 39, 63
BspACI CCGC 2 cut(s) 59, 81
BspHI TCATGA 1 cut(s) 36
BssMI GATC 2 cut(s) 39, 63
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 2 cut(s) 42, 66
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 39, 63
BstMCI CGRYCG 1 cut(s) 66
CciI TCATGA 1 cut(s) 36
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 37
CviJI RGCY 2 cut(s) 134, 149
CviKI_1 RGCY 2 cut(s) 134, 149
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 41, 65
DpnII GATC 2 cut(s) 39, 63
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 60
HapII CCGG 2 cut(s) 56, 114
Hin1II CATG 1 cut(s) 40
HinfI GANTC 2 cut(s) 8, 31
HpaII CCGG 2 cut(s) 56, 114
Hpy188I TCNGA 2 cut(s) 13, 30
Hpy188III TCNNGA 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 39, 63
LpnPI CCDG 2 cut(s) 69, 127
MaeI CTAG 1 cut(s) 135
MalI GATC 2 cut(s) 41, 65
MboI GATC 2 cut(s) 39, 63
MlyI GAGTC 2 cut(s) 17, 25
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 2 cut(s) 7, 58
MspI CCGG 2 cut(s) 56, 114
NdeII GATC 2 cut(s) 39, 63
NlaIII CATG 1 cut(s) 40
PagI TCATGA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PkrI GCNGC 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 2 cut(s) 16, 25
PpsI GAGTC 2 cut(s) 16, 25
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 39, 63
SchI GAGTC 2 cut(s) 17, 25
SgeI CNNG 9 cut(s) 19, 30, 49, 63, 68, 104, 126, 131, 147
SsiI CCGC 2 cut(s) 59, 81
SspMI CTAG 1 cut(s) 135
TaqI TCGA 1 cut(s) 66
TauI GCSGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.