Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

4530671 .. 4531785

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1064200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATCGGCTTTCAGCAGCTTTCTCTTCCGGAGGTTACGGGGACAAAGACCAGGAAGATCAATACGGTGGCGAGAGAAAATCCGCCACGGAGGGTCGCCACGGGTCTGGAGGTTACGGGGACAAAGACCAGGAAGATCAGTGCGGTGGCGAGAGAAAATCCGCCATGGAGGGTCGCCACGGGTCTGGAGGTTACGGGGACAAAGACCAGGAAGATCAGTACGGCGGCGAGAGAAAGTCCGCGACGGAGGGTCACCACGGGAAGCCGGGACGTGCGCCACCGACGACGAGTGAGCTGATGTCGAGTGCAAAGATTGTGGCGGAAGCAGCCAAATCTTCGATGAACAAAGGGGGCGACGAAAATATCGACAGAGCTAGGGTTTCCGAGGCTGCTAGTAACATCTTAAGCGGTGCCGCACACTATGGCAAGCTGGACGAGAAAGAAGGACTTGGGAGTTATGTTGGTAAGGCCGAGGATATGCTCCGCAAGTACGGCAGCGGCGGTGACGGTGAAAGCGGCGGAGGAGGAAGTCACAATTCTTCTGAGTCTTATAAGTCTAGTATGGGGAAGGACAGAAGAGACGATGATGAGAACTATCCGGTGAGCGGAGAGCATGAGACTAGGAAGAAACCTAGTAAAAAGGAGGATGAGGAGGAGGAGGAGGAGGGTGGATCAGGTGGGGTTGGGGATTACCTTAAGGTTGCTCAGGGTTTCTTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

25.48

Weight (kDa)

5.1

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	410
AccBSI	CCGCTC	1 cut(s)	606
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	29
AclWI	GGATC	2 cut(s)	12, 679
AfaI	GTAC	2 cut(s)	221, 491
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflII	CTTAAG	2 cut(s)	403, 695
AgsI	TTSAA	1 cut(s)	718
AhdI	GACNNNNNGTC	1 cut(s)	249
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	3 cut(s)	51, 129, 207
AluBI	AGCT	4 cut(s)	20, 295, 374, 430
AluI	AGCT	4 cut(s)	20, 295, 374, 430
Alw26I	GTCTC	2 cut(s)	573, 611
AlwI	GGATC	2 cut(s)	12, 679
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	17, 326, 389, 495
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	245, 515, 521, 613
BanI	GGYRCC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	29, 338, 376, 507
BceAI	ACGGC	2 cut(s)	238, 508
BciT130I	CCWGG	3 cut(s)	53, 131, 209
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	573, 611
BfaI	CTAG	5 cut(s)	375, 393, 558, 621, 633
BfrI	CTTAAG	2 cut(s)	403, 695
BisI	GCNGC	8 cut(s)	18, 226, 327, 390, 414, 496, 499, 517
BlsI	GCNGC	8 cut(s)	19, 227, 328, 391, 415, 497, 500, 518
Bme1390I	CCNGG	4 cut(s)	53, 131, 209, 267
BmeRI	GACNNNNNGTC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	4 cut(s)	53, 131, 209, 267
BpmI	CTGGAG	2 cut(s)	129, 207
Bpu10I	CCTNAGC	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	7 cut(s)	87, 100, 165, 178, 256, 384, 471
BsaWI	WCCGGW	2 cut(s)	29, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	3 cut(s)	53, 131, 209
BseDI	CCNNGG	7 cut(s)	87, 100, 165, 178, 256, 384, 471
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	534, 719
BseRI	GAGGAG	6 cut(s)	537, 665, 668, 671, 674, 677
BseXI	GCAGC	4 cut(s)	29, 338, 376, 507
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	470
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	30, 266, 599
BslFI	GGGAC	4 cut(s)	56, 134, 212, 282
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	573, 611
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	4 cut(s)	56, 134, 212, 282
BsnI	GGCC	1 cut(s)	470
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	4, 58, 136, 214, 671
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	2 cut(s)	535, 718
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	12, 679
BspT107I	GGYRCC	1 cut(s)	410
BspTI	CTTAAG	2 cut(s)	403, 695
BsrBI	CCGCTC	1 cut(s)	606
BssECI	CCNNGG	7 cut(s)	87, 100, 165, 178, 256, 384, 471
BssMI	GATC	5 cut(s)	4, 58, 136, 214, 671
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	53, 131, 209
Bst4CI	ACNGT	2 cut(s)	68, 509
Bst6I	CTCTTC	2 cut(s)	31, 571
BstAFI	CTTAAG	2 cut(s)	403, 695
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	543, 705
BstDSI	CCRYGG	5 cut(s)	87, 100, 165, 178, 256
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	7, 61, 139, 217, 674
BstMAI	GTCTC	2 cut(s)	573, 611
BstMBI	GATC	5 cut(s)	4, 58, 136, 214, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 492
BstNI	CCWGG	3 cut(s)	53, 131, 209
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	51, 129, 207, 265
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	29, 338, 376, 507
BstXI	CCANNNNNNTGG	2 cut(s)	107, 185
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	5 cut(s)	87, 100, 165, 178, 256
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	220, 490
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	2 cut(s)	166, 614
CviJI	RGCY	9 cut(s)	10, 20, 265, 295, 329, 374, 389, 430, 470
CviKI_1	RGCY	9 cut(s)	10, 20, 265, 295, 329, 374, 389, 430, 470
CviQI	GTAC	2 cut(s)	220, 490
DdeI	CTNAG	2 cut(s)	543, 705
DpnI	GATC	5 cut(s)	6, 60, 138, 216, 673
DpnII	GATC	5 cut(s)	4, 58, 136, 214, 671
DriI	GACNNNNNGTC	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	31, 571
Eam1105I	GACNNNNNGTC	1 cut(s)	249
EarI	CTCTTC	2 cut(s)	31, 571
EciI	GGCGGA	4 cut(s)	73, 151, 335, 534
Eco130I	CCWWGG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	51, 129, 207
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	2 cut(s)	169, 617
FaiI	YATR	7 cut(s)	167, 423, 459, 479, 552, 563, 615
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	4 cut(s)	56, 134, 212, 282
FatI	CATG	2 cut(s)	165, 613
Fnu4HI	GCNGC	8 cut(s)	18, 226, 327, 390, 414, 496, 499, 517
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	8 cut(s)	18, 226, 327, 390, 414, 496, 499, 517
FspBI	CTAG	5 cut(s)	375, 393, 558, 621, 633
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	8 cut(s)	18, 226, 327, 390, 414, 496, 499, 517
GsuI	CTGGAG	2 cut(s)	129, 207
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	3 cut(s)	30, 266, 599
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	169, 617
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	3 cut(s)	30, 266, 599
HphI	GGTGA	4 cut(s)	245, 515, 521, 613
Hpy188I	TCNGA	2 cut(s)	385, 544
Hpy188III	TCNNGA	4 cut(s)	30, 108, 186, 715
Hpy99I	CGWCG	4 cut(s)	247, 286, 289, 359
HpyAV	CCTTC	2 cut(s)	437, 562
HpyCH4III	ACNGT	2 cut(s)	68, 509
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 492
HpyF3I	CTNAG	2 cut(s)	543, 705
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	169, 617
HspAI	GCGC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	5 cut(s)	4, 58, 136, 214, 671
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	4 cut(s)	29, 338, 376, 507
MaeI	CTAG	5 cut(s)	375, 393, 558, 621, 633
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	7 cut(s)	35, 113, 191, 251, 395, 503, 530
MalI	GATC	5 cut(s)	6, 60, 138, 216, 673
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	5 cut(s)	4, 58, 136, 214, 671
MboII	GAAGA	8 cut(s)	18, 68, 146, 224, 327, 531, 588, 637
MluCI	AATT	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	554
MroI	TCCGGA	1 cut(s)	29
MseI	TTAA	2 cut(s)	404, 696
MspA1I	CMGCKG	1 cut(s)	498
MspCI	CTTAAG	2 cut(s)	403, 695
MspI	CCGG	3 cut(s)	30, 266, 599
MspR9I	CCNGG	4 cut(s)	53, 131, 209, 267
MvaI	CCWGG	3 cut(s)	53, 131, 209
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	326, 492
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	4, 58, 136, 214, 671
NlaIII	CATG	2 cut(s)	169, 617
NlaIV	GGNNCC	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	3 cut(s)	251, 503, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PkrI	GCNGC	8 cut(s)	19, 227, 328, 391, 415, 497, 500, 518
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	3 cut(s)	51, 129, 207
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	51, 129, 207
PspN4I	GGNNCC	1 cut(s)	412
RsaI	GTAC	2 cut(s)	221, 491
RsaNI	GTAC	2 cut(s)	220, 490
SaqAI	TTAA	2 cut(s)	404, 696
SatI	GCNGC	8 cut(s)	18, 226, 327, 390, 414, 496, 499, 517
Sau3AI	GATC	5 cut(s)	4, 58, 136, 214, 671
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	53, 131, 209, 267
SmlI	CTYRAG	2 cut(s)	403, 695
SmoI	CTYRAG	2 cut(s)	403, 695
Sse9I	AATT	1 cut(s)	535
SspMI	CTAG	5 cut(s)	375, 393, 558, 621, 633
StyD4I	CCNGG	4 cut(s)	51, 129, 207, 265
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	68, 509
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	3 cut(s)	302, 338, 366
TasI	AATT	1 cut(s)	535
TauI	GCSGC	4 cut(s)	228, 416, 501, 519
Tru1I	TTAA	2 cut(s)	404, 696
Tru9I	TTAA	2 cut(s)	404, 696
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	3 cut(s)	251, 503, 530
TseI	GCWGC	4 cut(s)	17, 326, 389, 495
Tsp45I	GTSAC	3 cut(s)	251, 503, 530
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	104, 260
TspRI	CASTG	1 cut(s)	146
Vha464I	CTTAAG	2 cut(s)	403, 695
XspI	CTAG	5 cut(s)	375, 393, 558, 621, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.