Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

54823579 .. 54823944

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG399200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACCACCCTCTCTCCTCCTCCTCCGAGTTTCAATCCTCTAAAACTCGCTCCCAAATCCCTCATTCCACCCAAACCGGCCTCCACCTCCGAACCCGACCCGTCCGTTACAGAAACCCCAACCCCAGGTCCAAACCCGACACAATCCTCCACCACCCTCCTGCACCTCGCTTTCAACCAAGACCACACCTGCTTCTCCTCCGCCACCGACTCCGGCTTCCGCGTCTACACCTGCGACCCCTTCCGCCATTTCCACAGCGACCCCTCCGGTCTACGCGGCGGCATTGGATTCGTCCCTTCCACTGCCACTACTTCGCCGTCTTCGGCGGCGGACCCGACCCGTTCTGCCCGCCCAACAAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

121

Amino Acids

12.72

Weight (kDa)

7.87

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	197, 239
Acc36I	ACCTGC	2 cut(s)	197, 239
AccI	GTMKAC	2 cut(s)	225, 271
AccII	CGCG	2 cut(s)	222, 276
AciI	CCGC	8 cut(s)	201, 220, 244, 276, 279, 326, 329, 349
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	34, 175
AjnI	CCWGG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	128, 331
AvaII	GGWCC	2 cut(s)	128, 331
BbsI	GAAGAC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	126
BfuAI	ACCTGC	2 cut(s)	197, 239
BisI	GCNGC	3 cut(s)	277, 280, 327
BlsI	GCNGC	3 cut(s)	278, 281, 328
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	128, 331
BmgT120I	GGNCC	2 cut(s)	128, 331
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseRI	GAGGAG	4 cut(s)	6, 9, 12, 187
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	222, 276
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	77, 213, 267
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	80
BspACI	CCGC	8 cut(s)	201, 220, 244, 276, 279, 326, 329, 349
BspANI	GGCC	1 cut(s)	80
BspFNI	CGCG	2 cut(s)	222, 276
BspHI	TCATGA	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	333
BspMI	ACCTGC	2 cut(s)	197, 239
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	349
BstFNI	CGCG	2 cut(s)	222, 276
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	222, 276
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	2 cut(s)	197, 239
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	128, 331
CseI	GACGC	1 cut(s)	211
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	2 cut(s)	80, 216
CviKI_1	RGCY	2 cut(s)	80, 216
EciI	GGCGGA	3 cut(s)	190, 233, 344
Eco47I	GGWCC	2 cut(s)	128, 331
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	366
FaiI	YATR	1 cut(s)	364
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	362
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	2 cut(s)	225, 271
Fnu4HI	GCNGC	3 cut(s)	277, 280, 327
Fsp4HI	GCNGC	3 cut(s)	277, 280, 327
GluI	GCNGC	3 cut(s)	277, 280, 327
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	77, 213, 267
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	2 cut(s)	209, 288
HpaII	CCGG	3 cut(s)	77, 213, 267
Hpy166II	GTNNAC	2 cut(s)	226, 272
Hpy188I	TCNGA	2 cut(s)	27, 91
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	2 cut(s)	226, 272
HpyAV	CCTTC	2 cut(s)	250, 306
HpyCH4V	TGCA	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	90, 111, 138, 173, 202, 226, 244, 280
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	203
MspI	CCGG	3 cut(s)	77, 213, 267
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	222, 276
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	1 cut(s)	333
PagI	TCATGA	1 cut(s)	362
PaqCI	CACCTGC	2 cut(s)	197, 239
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	278, 281, 328
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	128, 331
SatI	GCNGC	3 cut(s)	277, 280, 327
Sau96I	GGNCC	2 cut(s)	128, 331
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	6 cut(s)	89, 130, 168, 191, 233, 362
SinI	GGWCC	2 cut(s)	128, 331
SsiI	CCGC	8 cut(s)	201, 220, 244, 276, 279, 326, 329, 349
StyD4I	CCNGG	1 cut(s)	124
TauI	GCSGC	3 cut(s)	279, 282, 329
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	128, 331
XmiI	GTMKAC	2 cut(s)	225, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.