Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437595.1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

657 .. 1556

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

gcatccaagacctctacaaagtcatcgacaaaaccaccatccaaaggtgccgcttcggatgctgaaaacgcatccaagacctctacaaagtcatcgacaaagccgtcatccaaaagtgccgattcggatgctgaagacgcatccaaggcgtctacaaagtcatcgacaaaaccatcatctaaaggtgctgattcggataatgaagacgcatccaagacgtctacaaagtcatcgacaaagccatcatccaaaggtgctggttcggatgatgaagccaagacatccacaaagtcatcaacaaagccgtcatctcagggtgctaaagatgccgcaaagtcaacagcaaagtcgtcatccggcagtggtggtaaggagtccgacaaagtcgaaatcagcgagagaaaagcaggcaagtcgtcaggaggggccaactctgagaataaggaagaggtgccatcgactaaagagatcatgagtagcgcgaagttggtggcgtcggcagcgcagggggagaatgtggagaaggccgagttagcgggggctgcgagcaatcttctcggagcggccaatcactacggcaagcttgagcaatcggggtttggcaagtatctggataaggctgaggatatgctccgtaagatggccaagaaatctgattctgagtccgacactggtgacgataagactaagaagtctggcgctggtgacagtaagacaaagaagtctagcgccggtgacagtaagactaagaagtctggtgctagtgatggtgaaggtgatgaggacaagccgaagaaaaaatcagagaagaagccagttgccaaagatgatgaggaagaaggtggtggtggtgggtttggagatatcttgaagatggcgaaaggtttcttgaagggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

30.2

Weight (kDa)

9.21

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	103, 691, 721, 751
AatII	GACGTC	1 cut(s)	221
AccB1I	GGYRCC	2 cut(s)	47, 451
AccBSI	CCGCTC	1 cut(s)	563
AccI	GTMKAC	2 cut(s)	152, 221
AccII	CGCG	1 cut(s)	482
AciI	CCGC	4 cut(s)	51, 330, 536, 563
AcoI	YGGCCR	2 cut(s)	564, 642
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	3 cut(s)	149, 218, 494
AfiI	CCNNNNNNNGG	2 cut(s)	44, 640
AgsI	TTSAA	2 cut(s)	871, 892
AluBI	AGCT	1 cut(s)	583
AluI	AGCT	1 cut(s)	583
AoxI	GGCC	4 cut(s)	426, 525, 564, 642
ApeKI	GCWGC	2 cut(s)	500, 542
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	4 cut(s)	482, 505, 701, 731
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	5 cut(s)	686, 716, 746, 782, 788
BalI	TGGCCA	1 cut(s)	644
BanI	GGYRCC	2 cut(s)	47, 451
BbsI	GAAGAC	2 cut(s)	141, 210
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	512, 529
BccI	CCATC	7 cut(s)	46, 181, 250, 463, 634, 761, 868
BceAI	ACGGC	3 cut(s)	88, 289, 592
BcgI	CGANNNNNNTGC	6 cut(s)	110, 144, 396, 430, 538, 572
BfaI	CTAG	2 cut(s)	726, 762
BfoI	RGCGCY	2 cut(s)	702, 732
BisI	GCNGC	5 cut(s)	51, 330, 501, 543, 564
BlsI	GCNGC	5 cut(s)	52, 331, 502, 544, 565
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	3 cut(s)	49, 427, 453
BmsI	GCATC	7 cut(s)	11, 49, 80, 118, 149, 218, 316
BpiI	GAAGAC	2 cut(s)	141, 210
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	605
BsaHI	GRCGYC	3 cut(s)	149, 218, 494
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 640
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	676, 815
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	44, 640
BseMII	CTCAG	4 cut(s)	326, 426, 612, 651
BseNI	ACTGG	2 cut(s)	676, 815
BseXI	GCAGC	2 cut(s)	512, 529
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	4 cut(s)	428, 527, 566, 644
BshNI	GGYRCC	2 cut(s)	47, 451
BsiSI	CCGG	2 cut(s)	357, 732
BslI	CCNNNNNNNGG	2 cut(s)	44, 640
BsnI	GGCC	4 cut(s)	428, 527, 566, 644
Bsp143I	GATC	1 cut(s)	468
BspACI	CCGC	4 cut(s)	51, 330, 536, 563
BspANI	GGCC	4 cut(s)	428, 527, 566, 644
BspCNI	CTCAG	4 cut(s)	325, 427, 613, 652
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	49, 427, 453
BspT107I	GGYRCC	2 cut(s)	47, 451
BsrBI	CCGCTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	676, 815
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	468
BssNI	GRCGYC	3 cut(s)	149, 218, 494
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	710, 740
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	3 cut(s)	149, 218, 494
BstC8I	GCNNGC	3 cut(s)	409, 547, 581
BstDEI	CTNAG	6 cut(s)	312, 435, 621, 660, 687, 747
BstFNI	CGCG	1 cut(s)	482
BstH2I	RGCGCY	2 cut(s)	702, 732
BstHHI	GCGC	4 cut(s)	482, 505, 701, 731
BstKTI	GATC	1 cut(s)	471
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 68, 137, 146, 326, 500, 533, 542
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	512, 529
BstV2I	GAAGAC	2 cut(s)	141, 210
BsuRI	GGCC	4 cut(s)	428, 527, 566, 644
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	367, 669
Cac8I	GCNNGC	3 cut(s)	409, 547, 581
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	4 cut(s)	482, 505, 701, 731
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	4 cut(s)	138, 146, 215, 483
CviAII	CATG	1 cut(s)	472
DdeI	CTNAG	6 cut(s)	312, 435, 621, 660, 687, 747
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
DrdI	GACNNNNNNGTC	4 cut(s)	103, 691, 721, 751
DseDI	GACNNNNNNGTC	4 cut(s)	103, 691, 721, 751
EaeI	YGGCCR	2 cut(s)	564, 642
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	865
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	475
FaiI	YATR	2 cut(s)	473, 629
FatI	CATG	1 cut(s)	471
FauI	CCCGC	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	152, 221
Fnu4HI	GCNGC	5 cut(s)	51, 330, 501, 543, 564
Fsp4HI	GCNGC	5 cut(s)	51, 330, 501, 543, 564
FspBI	CTAG	2 cut(s)	726, 762
GlaI	GCGC	4 cut(s)	481, 504, 700, 730
GluI	GCNGC	5 cut(s)	51, 330, 501, 543, 564
HaeII	RGCGCY	2 cut(s)	702, 732
HaeIII	GGCC	4 cut(s)	428, 527, 566, 644
HapII	CCGG	2 cut(s)	357, 732
HgaI	GACGC	4 cut(s)	138, 146, 215, 483
HhaI	GCGC	4 cut(s)	482, 505, 701, 731
Hin1I	GRCGYC	3 cut(s)	149, 218, 494
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	4 cut(s)	480, 503, 699, 729
HinP1I	GCGC	4 cut(s)	480, 503, 699, 729
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	122, 191, 374, 656, 662
HpaII	CCGG	2 cut(s)	357, 732
HphI	GGTGA	5 cut(s)	686, 716, 746, 782, 788
Hpy166II	GTNNAC	3 cut(s)	153, 222, 339
Hpy188III	TCNNGA	5 cut(s)	420, 472, 611, 868, 889
Hpy8I	GTNNAC	3 cut(s)	153, 222, 339
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	4 cut(s)	517, 767, 833, 886
HpyCH4III	ACNGT	2 cut(s)	710, 740
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 68, 137, 146, 326, 500, 533, 542
HpyF3I	CTNAG	6 cut(s)	312, 435, 621, 660, 687, 747
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	3 cut(s)	149, 218, 494
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	4 cut(s)	480, 503, 699, 729
Kzo9I	GATC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	560, 636
Lsp1109I	GCAGC	2 cut(s)	512, 529
LweI	GCATC	7 cut(s)	11, 49, 80, 118, 149, 218, 316
MaeI	CTAG	2 cut(s)	726, 762
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	674, 704, 734
MalI	GATC	1 cut(s)	470
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	1 cut(s)	468
MboII	GAAGA	8 cut(s)	146, 215, 458, 545, 805, 820, 848, 883
MlsI	TGGCCA	1 cut(s)	644
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	383, 671
MmeI	TCCRAC	2 cut(s)	402, 690
MnlI	CCTC	7 cut(s)	22, 91, 416, 442, 616, 775, 826
Mox20I	TGGCCA	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	644
Msp20I	TGGCCA	1 cut(s)	644
MspI	CCGG	2 cut(s)	357, 732
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	8 cut(s)	59, 68, 137, 146, 326, 500, 533, 542
NdeII	GATC	1 cut(s)	468
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	3 cut(s)	49, 427, 453
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	3 cut(s)	674, 704, 734
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 393
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	122, 191, 656
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	5 cut(s)	52, 331, 502, 544, 565
PleI	GAGTC	2 cut(s)	382, 670
PpsI	GAGTC	2 cut(s)	382, 670
PspN4I	GGNNCC	3 cut(s)	49, 427, 453
PspPI	GGNCC	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	383
SatI	GCNGC	5 cut(s)	51, 330, 501, 543, 564
Sau3AI	GATC	1 cut(s)	468
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	383, 671
SfaNI	GCATC	7 cut(s)	11, 49, 80, 118, 149, 218, 316
SgrAI	CRCCGGYG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SsiI	CCGC	4 cut(s)	51, 330, 536, 563
SspMI	CTAG	2 cut(s)	726, 762
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	710, 740
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	6 cut(s)	26, 95, 164, 233, 387, 458
TauI	GCSGC	3 cut(s)	53, 332, 566
TfiI	GAWTC	3 cut(s)	122, 191, 656
TscAI	CASTG	2 cut(s)	367, 676
TseFI	GTSAC	3 cut(s)	674, 704, 734
TseI	GCWGC	2 cut(s)	500, 542
Tsp45I	GTSAC	3 cut(s)	674, 704, 734
TspDTI	ATGAA	2 cut(s)	216, 285
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	2 cut(s)	367, 676
Tth111I	GACNNNGTC	1 cut(s)	383
XmiI	GTMKAC	2 cut(s)	152, 221
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	726, 762
ZraI	GACGTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.