Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000436.1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

13669 .. 14310

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000436.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaccaccctctctcttcctcctccgagtttcaatcctctaaaactcgctcccaaatccctcattccacccaaaccggcctccgtctccgcctccgaacccgacccgtcctttacagaaaccccaaccctaggtccaaacccgacccaatcccccaccacgctcctccacctcgctttcaaccaagaccacacctgcttctccgccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccacttccacagcgacccctccggtctacgcggcggccttggattcgtccagatgctcttccactgccactacttcgccgtcttcggcggcggaccagacccgttctgccccccccccccccccccccccctccatcgaagagtcgaagactcgaagactctcgctcttctctcactcctctctgccctccatcgaagatcgaaggctctcgctcttctctcactcctctactccatcgaagatcggaagttgttgctcttctctcactcctctctgccctcctcgaagattcgaaggctctcactcctctctgccttccatcgaggaatcgattcttcaactcgattcttcaagcctcccactccgaatcgatgggaaaactgcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

9.27

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	203, 245
Acc36I	ACCTGC	2 cut(s)	203, 245
AccI	GTMKAC	2 cut(s)	231, 277
AccII	CGCG	2 cut(s)	228, 282
AciI	CCGC	9 cut(s)	90, 204, 207, 226, 250, 282, 285, 339, 342
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	34, 181, 591, 604
Alw26I	GTCTC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	78, 286
Asp700I	GAANNNNTTC	1 cut(s)	583
AspA2I	CCTAGG	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	134, 344
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	134, 344
AvrII	CCTAGG	1 cut(s)	130
BbsI	GAAGAC	3 cut(s)	325, 405, 413
BccI	CCATC	5 cut(s)	393, 450, 494, 579, 618
BceAI	ACGGC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	2 cut(s)	203, 245
BisI	GCNGC	4 cut(s)	207, 283, 286, 340
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	4 cut(s)	208, 284, 287, 341
Bme18I	GGWCC	2 cut(s)	134, 344
BmgT120I	GGNCC	2 cut(s)	134, 344
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	3 cut(s)	325, 405, 413
Bpu14I	TTCGAA	1 cut(s)	544
Bsa29I	ATCGAT	2 cut(s)	582, 622
BsaJI	CCNNGG	2 cut(s)	130, 289
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	76
BseCI	ATCGAT	2 cut(s)	582, 622
BseDI	CCNNGG	2 cut(s)	130, 289
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseRI	GAGGAG	7 cut(s)	12, 155, 419, 467, 511, 523, 548
Bsh1236I	CGCG	2 cut(s)	228, 282
BshFI	GGCC	2 cut(s)	80, 288
BshVI	ATCGAT	2 cut(s)	582, 622
BsiSI	CCGG	3 cut(s)	77, 219, 273
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	80, 288
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	449, 493
BspACI	CCGC	9 cut(s)	90, 204, 207, 226, 250, 282, 285, 339, 342
BspANI	GGCC	2 cut(s)	80, 288
BspDI	ATCGAT	2 cut(s)	582, 622
BspFNI	CGCG	2 cut(s)	228, 282
BspMI	ACCTGC	2 cut(s)	203, 245
BspQI	GCTCTTC	4 cut(s)	314, 423, 471, 515
BspT104I	TTCGAA	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	130, 289
BssMI	GATC	2 cut(s)	449, 493
BssT1I	CCWWGG	2 cut(s)	130, 289
Bst6I	CTCTTC	6 cut(s)	21, 314, 385, 423, 471, 515
BstBI	TTCGAA	1 cut(s)	544
BstFNI	CGCG	2 cut(s)	228, 282
BstKTI	GATC	2 cut(s)	452, 496
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	449, 493
BstUI	CGCG	2 cut(s)	228, 282
BstV2I	GAAGAC	3 cut(s)	325, 405, 413
Bsu15I	ATCGAT	2 cut(s)	582, 622
BsuRI	GGCC	2 cut(s)	80, 288
BsuTUI	ATCGAT	2 cut(s)	582, 622
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	203, 245
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	134, 344
ClaI	ATCGAT	2 cut(s)	582, 622
CseI	GACGC	1 cut(s)	217
CviJI	RGCY	6 cut(s)	80, 222, 288, 458, 550, 607
CviKI_1	RGCY	6 cut(s)	80, 222, 288, 458, 550, 607
DpnI	GATC	2 cut(s)	451, 495
DpnII	GATC	2 cut(s)	449, 493
Eam1104I	CTCTTC	6 cut(s)	21, 314, 385, 423, 471, 515
EarI	CTCTTC	6 cut(s)	21, 314, 385, 423, 471, 515
EciI	GGCGGA	4 cut(s)	79, 193, 239, 357
Eco130I	CCWWGG	2 cut(s)	130, 289
Eco47I	GGWCC	2 cut(s)	134, 344
EcoT14I	CCWWGG	2 cut(s)	130, 289
ErhI	CCWWGG	2 cut(s)	130, 289
Esp3I	CGTCTC	1 cut(s)	91
FblI	GTMKAC	2 cut(s)	231, 277
Fnu4HI	GCNGC	4 cut(s)	207, 283, 286, 340
Fsp4HI	GCNGC	4 cut(s)	207, 283, 286, 340
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	4 cut(s)	207, 283, 286, 340
HaeIII	GGCC	2 cut(s)	80, 288
HapII	CCGG	3 cut(s)	77, 219, 273
HgaI	GACGC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	77, 219, 273
Hpy166II	GTNNAC	2 cut(s)	232, 278
Hpy188I	TCNGA	4 cut(s)	27, 97, 498, 618
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	232, 278
HpyAV	CCTTC	4 cut(s)	256, 448, 540, 577
Kzo9I	GATC	2 cut(s)	449, 493
LguI	GCTCTTC	4 cut(s)	314, 423, 471, 515
LmnI	GCTCC	2 cut(s)	55, 168
LpnPI	CCDG	7 cut(s)	90, 208, 232, 250, 286, 314, 360
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	131
MalI	GATC	2 cut(s)	451, 495
MboI	GATC	2 cut(s)	449, 493
MlyI	GAGTC	4 cut(s)	209, 395, 402, 403
MroXI	GAANNNNTTC	1 cut(s)	583
MspI	CCGG	3 cut(s)	77, 219, 273
MvnI	CGCG	2 cut(s)	228, 282
NdeII	GATC	2 cut(s)	449, 493
NspV	TTCGAA	1 cut(s)	544
PaqCI	CACCTGC	2 cut(s)	203, 245
PciSI	GCTCTTC	4 cut(s)	314, 423, 471, 515
PdmI	GAANNNNTTC	1 cut(s)	583
PfeI	GAWTC	6 cut(s)	294, 541, 579, 584, 597, 619
PkrI	GCNGC	4 cut(s)	208, 284, 287, 341
PleI	GAGTC	4 cut(s)	209, 395, 401, 403
PpsI	GAGTC	4 cut(s)	209, 395, 401, 403
PspPI	GGNCC	2 cut(s)	134, 344
SapI	GCTCTTC	4 cut(s)	314, 423, 471, 515
SatI	GCNGC	4 cut(s)	207, 283, 286, 340
Sau3AI	GATC	2 cut(s)	449, 493
Sau96I	GGNCC	2 cut(s)	134, 344
SchI	GAGTC	4 cut(s)	209, 395, 402, 403
SetI	ASST	4 cut(s)	136, 174, 197, 239
SfaNI	GCATC	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	2 cut(s)	134, 344
SsiI	CCGC	9 cut(s)	90, 204, 207, 226, 250, 282, 285, 339, 342
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	130, 289
TauI	GCSGC	4 cut(s)	209, 285, 288, 342
TfiI	GAWTC	6 cut(s)	294, 541, 579, 584, 597, 619
TscAI	CASTG	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	134, 344
XmaJI	CCTAGG	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	231, 277
XmnI	GAANNNNTTC	1 cut(s)	583
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.