Rh1DG261300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000749
Physical Location & Seq
Reverse (-)
47824508 .. 47826291
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG261300.1

Sequence Viewer

Length: 234 bp
ATGTTTGATGTCATGTTCATTCCACGGCAGGGGAGCGCTGGTCCTGGGGATCTGACGCTGGTGGTGGAGCGGCAGGAGTGGTGGGGAAGCGACGGTGCAGGTGCAGCTGGTGACGTGATTTGCCGGTGGGGCTCGTTTTGCCGGCGGCGGCCTTGGTGGAGCGCGGTGCTGCCTGGGTGGATCGCGGCGCTGAGTTTTGGTGGGGAGTGGTGGATGGGCCGGACCCAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

6.08

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 2 cut(s) 164, 185
AciI CCGC 5 cut(s) 70, 145, 148, 164, 185
AclWI GGATC 2 cut(s) 57, 188
AfeI AGCGCT 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 29
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 2 cut(s) 43, 172
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwI GGATC 2 cut(s) 57, 188
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 2 cut(s) 149, 217
ApeKI GCWGC 2 cut(s) 104, 169
AspLEI GCGC 3 cut(s) 38, 164, 190
AspS9I GGNCC 3 cut(s) 41, 217, 222
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 41, 222
BanII GRGCYC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 116, 156
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 45, 174
BfaI CTAG 1 cut(s) 232
BfoI RGCGCY 2 cut(s) 39, 191
BfuAI ACCTGC 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 6 cut(s) 71, 105, 146, 149, 170, 186
BlsI GCNGC 6 cut(s) 72, 106, 147, 150, 171, 187
Bme1390I CCNGG 2 cut(s) 45, 174
Bme18I GGWCC 2 cut(s) 41, 222
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 41, 217, 222
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 45, 174
BsaJI CCNNGG 4 cut(s) 23, 44, 152, 173
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 123, 141
BseBI CCWGG 2 cut(s) 45, 174
BseDI CCNNGG 4 cut(s) 23, 44, 152, 173
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 116, 156
BsgI GTGCAG 2 cut(s) 117, 123
Bsh1236I CGCG 2 cut(s) 164, 185
BshFI GGCC 2 cut(s) 151, 219
BsiSI CCGG 3 cut(s) 124, 142, 220
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 2 cut(s) 151, 219
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 49, 180
BspACI CCGC 5 cut(s) 70, 145, 148, 164, 185
BspANI GGCC 2 cut(s) 151, 219
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 2 cut(s) 164, 185
BspLI GGNNCC 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 2 cut(s) 57, 188
BsrBI CCGCTC 1 cut(s) 70
BsrFI RCCGGY 2 cut(s) 123, 141
BssAI RCCGGY 2 cut(s) 123, 141
BssECI CCNNGG 4 cut(s) 23, 44, 152, 173
BssMI GATC 2 cut(s) 49, 180
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 45, 174
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 2 cut(s) 164, 185
BstH2I RGCGCY 2 cut(s) 39, 191
BstHHI GCGC 3 cut(s) 38, 164, 190
BstKTI GATC 2 cut(s) 52, 183
BstMBI GATC 2 cut(s) 49, 180
BstMWI GCNNNNNNNGC 3 cut(s) 104, 129, 138
BstNI CCWGG 2 cut(s) 45, 174
BstSCI CCNGG 2 cut(s) 43, 172
BstUI CGCG 2 cut(s) 164, 185
BstV1I GCAGC 2 cut(s) 116, 156
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 2 cut(s) 151, 219
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 3 cut(s) 38, 164, 190
Cfr10I RCCGGY 2 cut(s) 123, 141
Cfr13I GGNCC 3 cut(s) 41, 217, 222
CseI GACGC 1 cut(s) 64
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 107, 132, 151, 219
CviKI_1 RGCY 4 cut(s) 107, 132, 151, 219
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 51, 182
DpnII GATC 2 cut(s) 49, 180
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 41, 222
Eco47III AGCGCT 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 43, 172
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 16
FaiI YATR 1 cut(s) 14
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 71, 105, 146, 149, 170, 186
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 6 cut(s) 71, 105, 146, 149, 170, 186
FspBI CTAG 1 cut(s) 232
GlaI GCGC 3 cut(s) 37, 163, 189
GluI GCNGC 6 cut(s) 71, 105, 146, 149, 170, 186
HaeII RGCGCY 2 cut(s) 39, 191
HaeIII GGCC 2 cut(s) 151, 219
HapII CCGG 3 cut(s) 124, 142, 220
HgaI GACGC 1 cut(s) 64
HhaI GCGC 3 cut(s) 38, 164, 190
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 3 cut(s) 36, 162, 188
HinP1I GCGC 3 cut(s) 36, 162, 188
HpaII CCGG 3 cut(s) 124, 142, 220
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 98, 104
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 129, 138
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 3 cut(s) 36, 162, 188
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 2 cut(s) 49, 180
LmnI GCTCC 3 cut(s) 33, 67, 159
Lsp1109I GCAGC 2 cut(s) 116, 156
MaeI CTAG 1 cut(s) 232
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 51, 182
MbiI CCGCTC 1 cut(s) 70
MboI GATC 2 cut(s) 49, 180
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 124, 142, 220
MspR9I CCNGG 2 cut(s) 45, 174
MvaI CCWGG 2 cut(s) 45, 174
MvnI CGCG 2 cut(s) 164, 185
MwoI GCNNNNNNNGC 3 cut(s) 104, 129, 138
NaeI GCCGGC 1 cut(s) 143
NdeII GATC 2 cut(s) 49, 180
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 143
PkrI GCNGC 6 cut(s) 72, 106, 147, 150, 171, 187
Psp6I CCWGG 2 cut(s) 43, 172
PspGI CCWGG 2 cut(s) 43, 172
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 3 cut(s) 41, 217, 222
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 107
SatI GCNGC 6 cut(s) 71, 105, 146, 149, 170, 186
Sau3AI GATC 2 cut(s) 49, 180
Sau96I GGNCC 3 cut(s) 41, 217, 222
ScrFI CCNGG 2 cut(s) 45, 174
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 103, 109, 117
SinI GGWCC 2 cut(s) 41, 222
SsiI CCGC 5 cut(s) 70, 145, 148, 164, 185
SspMI CTAG 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 43, 172
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 117
TauI GCSGC 4 cut(s) 73, 148, 151, 188
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 104, 169
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 41, 222
XspI CTAG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.