Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007391.1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

67180 .. 67434

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007391.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ctggctttcaaccaggaccacacctgcttctccgccgccaccgactccgacttccgcgtctacacctgcgaccccttccaccgctgccattgcgacccctctgatccacgacacggcgtcggattcgtccaaatgctcttccactgccactacttcgtcatcctcaacggcggacccaacccgttctgcccgcccaacaaggtcacgatctatgacaaccgtcagtcccactgcctcagcgagctattccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

84

Amino Acids

9.69

Weight (kDa)

6.37

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	32, 74
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc36I	ACCTGC	2 cut(s)	32, 74
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	57
AciI	CCGC	6 cut(s)	33, 36, 55, 82, 171, 191
AclWI	GGATC	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	16, 173
AvaII	GGWCC	2 cut(s)	16, 173
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	130, 184
BciT130I	CCWGG	1 cut(s)	14
BfuAI	ACCTGC	2 cut(s)	32, 74
BisI	GCNGC	2 cut(s)	36, 85
BlsI	GCNGC	2 cut(s)	37, 86
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	16, 173
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	16, 173
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	103, 207
BspACI	CCGC	6 cut(s)	33, 36, 55, 82, 171, 191
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	175
BspMI	ACCTGC	2 cut(s)	32, 74
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	88
BssMI	GATC	2 cut(s)	103, 207
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	191, 242
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	106, 210
BstMBI	GATC	2 cut(s)	103, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	2 cut(s)	142, 229
BtsIMutI	CAGTG	2 cut(s)	142, 229
BveI	ACCTGC	2 cut(s)	32, 74
Cac8I	GCNNGC	2 cut(s)	191, 242
Cfr13I	GGNCC	2 cut(s)	16, 173
CseI	GACGC	2 cut(s)	46, 106
CviJI	RGCY	2 cut(s)	5, 244
CviKI_1	RGCY	2 cut(s)	5, 244
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	105, 209
DpnII	GATC	2 cut(s)	103, 207
DrdI	GACNNNNNNGTC	1 cut(s)	56
DriI	GACNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	22, 186
Eco47I	GGWCC	2 cut(s)	16, 173
EcoRII	CCWGG	1 cut(s)	12
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	36, 85
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	36, 85
GluI	GCNGC	2 cut(s)	36, 85
HgaI	GACGC	2 cut(s)	46, 106
Hin1I	GRCGYC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	44, 123
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	49, 103, 122, 251
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	103, 207
LguI	GCTCTTC	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	26, 37, 79
Lsp1109I	GCAGC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	105, 209
MboI	GATC	2 cut(s)	103, 207
MboII	GAAGA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	72, 100
MnlI	CCTC	3 cut(s)	109, 173, 245
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	2 cut(s)	103, 207
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	202
PaqCI	CACCTGC	2 cut(s)	32, 74
PciSI	GCTCTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	37, 86
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	16, 173
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	2 cut(s)	36, 85
Sau3AI	GATC	2 cut(s)	103, 207
Sau96I	GGNCC	2 cut(s)	16, 173
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	4 cut(s)	26, 68, 204, 246
SinI	GGWCC	2 cut(s)	16, 173
SsiI	CCGC	6 cut(s)	33, 36, 55, 82, 171, 191
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	221
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	2 cut(s)	149, 236
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	149, 236
VpaK11BI	GGWCC	2 cut(s)	16, 173
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.