Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00270

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

87326 .. 88538

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCTGAAGACGCTTCCAAGACATCTACGAAGCCATTATCCAAAGGCACTGATTCGGATGCTGGAGACAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCGGATGCTGTAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAACCGGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCACCATCCAAAGGTGCCGCTTCGGATGCTGAAAACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCATCCAAAAGTGCCGATTCGGATGCTGAAGACGCATCCAAGGCGTCTACAAAGTCATCGACAAAACCATCATCTAAAGGTGCTCATTCGGATAATGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCATCATCCAAAGGTGCTGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAGGGTGCTAAAGATGCCGCAAAGTCAACAGCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCCGACAAAGTCGAAATCAGCGAGAGAAAAGCAGGCAAGTCGTCAGGAGGGGCCAACTCTGATAATAAGGAAGAGGTGCCATCGACTAAAGAGATCATGAGTAGCGCGAAAGCGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAATCTTCTCGGCGCGGCCAATCACTACGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATCTGGATAAGGCTGAAGATATGCTCCGTAAGATGGCCAAGAAATCTGATTCTGAGTCCGACACTGGTGACGATAAGACTAAGAAGTCTGGCGCTGGTGACAGTAAGACAAAGAAGTCTAGCGCCGGTGACAGTAAGACTAAGAAGTCTGGTGCTAGTGATGGTGAAGGTGATGAGGACAAGCCGAAGAAAAAATCAGAGAAGAAGCCAGTTGCCAAAGACGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCGAAAGGTTTCTTGAAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

40.73

Weight (kDa)

9.4

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	5 cut(s)	175, 361, 994, 1024, 1054
AatII	GACGTC	3 cut(s)	86, 272, 479
AccB1I	GGYRCC	3 cut(s)	188, 305, 772
AccI	GTMKAC	5 cut(s)	86, 207, 272, 410, 479
AccII	CGCG	2 cut(s)	803, 866
AciI	CCGC	6 cut(s)	309, 651, 681, 809, 839, 866
AcoI	YGGCCR	2 cut(s)	867, 945
AcuI	CTGAAG	4 cut(s)	26, 273, 411, 945
AcyI	GRCGYC	4 cut(s)	83, 269, 407, 476
AfiI	CCNNNNNNNGG	2 cut(s)	302, 943
AgsI	TTSAA	2 cut(s)	1174, 1195
AluBI	AGCT	1 cut(s)	886
AluI	AGCT	1 cut(s)	886
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	4 cut(s)	747, 828, 867, 945
ApeKI	GCWGC	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	1187
AspLEI	GCGC	4 cut(s)	803, 866, 1004, 1034
AspS9I	GGNCC	1 cut(s)	747
AsuHPI	GGTGA	5 cut(s)	989, 1019, 1049, 1085, 1091
BalI	TGGCCA	1 cut(s)	947
BanI	GGYRCC	3 cut(s)	188, 305, 772
BbsI	GAAGAC	5 cut(s)	14, 144, 261, 399, 468
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	9 cut(s)	115, 304, 439, 508, 571, 784, 937, 1064, 1171
BceAI	ACGGC	4 cut(s)	160, 346, 610, 895
BcgI	CGANNNNNNTGC	8 cut(s)	182, 216, 368, 402, 717, 751, 841, 875
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	1029, 1065
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	2 cut(s)	1005, 1035
BisI	GCNGC	4 cut(s)	309, 651, 846, 867
BlsI	GCNGC	4 cut(s)	310, 652, 847, 868
BmgT120I	GGNCC	1 cut(s)	747
BmiI	GGNNCC	4 cut(s)	190, 307, 748, 774
BpiI	GAAGAC	5 cut(s)	14, 144, 261, 399, 468
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	908
BsaHI	GRCGYC	4 cut(s)	83, 269, 407, 476
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 943
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	2 cut(s)	979, 1118
BseDI	CCNNGG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	302, 943
BseMII	CTCAG	2 cut(s)	647, 954
BseNI	ACTGG	2 cut(s)	979, 1118
BseXI	GCAGC	1 cut(s)	832
Bsh1236I	CGCG	2 cut(s)	803, 866
BshFI	GGCC	4 cut(s)	749, 830, 869, 947
BshNI	GGYRCC	3 cut(s)	188, 305, 772
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	3 cut(s)	245, 678, 1035
BslI	CCNNNNNNNGG	2 cut(s)	302, 943
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	749, 830, 869, 947
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	789
BspACI	CCGC	6 cut(s)	309, 651, 681, 809, 839, 866
BspANI	GGCC	4 cut(s)	749, 830, 869, 947
BspCNI	CTCAG	2 cut(s)	646, 955
BspFNI	CGCG	2 cut(s)	803, 866
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	4 cut(s)	190, 307, 748, 774
BspT107I	GGYRCC	3 cut(s)	188, 305, 772
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	2 cut(s)	979, 1118
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	789
BssNI	GRCGYC	4 cut(s)	83, 269, 407, 476
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	1013, 1043
Bst6I	CTCTTC	1 cut(s)	762
BstACI	GRCGYC	4 cut(s)	83, 269, 407, 476
BstC8I	GCNNGC	3 cut(s)	730, 850, 884
BstDEI	CTNAG	4 cut(s)	633, 963, 990, 1050
BstFNI	CGCG	2 cut(s)	803, 866
BstH2I	RGCGCY	2 cut(s)	1005, 1035
BstHHI	GCGC	4 cut(s)	803, 866, 1004, 1034
BstKTI	GATC	1 cut(s)	792
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	789
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	2 cut(s)	803, 866
BstV1I	GCAGC	1 cut(s)	832
BstV2I	GAAGAC	5 cut(s)	14, 144, 261, 399, 468
BsuRI	GGCC	4 cut(s)	749, 830, 869, 947
BtsIMutI	CAGTG	2 cut(s)	47, 972
Cac8I	GCNNGC	3 cut(s)	730, 850, 884
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	4 cut(s)	803, 866, 1004, 1034
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	747
CseI	GACGC	8 cut(s)	19, 80, 149, 218, 266, 396, 404, 473
CviAII	CATG	1 cut(s)	793
DdeI	CTNAG	4 cut(s)	633, 963, 990, 1050
DpnI	GATC	1 cut(s)	791
DpnII	GATC	1 cut(s)	789
DrdI	GACNNNNNNGTC	5 cut(s)	175, 361, 994, 1024, 1054
DseDI	GACNNNNNNGTC	5 cut(s)	175, 361, 994, 1024, 1054
EaeI	YGGCCR	2 cut(s)	867, 945
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	1168
Eco57I	CTGAAG	4 cut(s)	26, 273, 411, 945
EcoRV	GATATC	1 cut(s)	1168
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	796
FaiI	YATR	2 cut(s)	794, 932
FatI	CATG	1 cut(s)	792
FauI	CCCGC	2 cut(s)	802, 832
FblI	GTMKAC	5 cut(s)	86, 207, 272, 410, 479
Fnu4HI	GCNGC	4 cut(s)	309, 651, 846, 867
Fsp4HI	GCNGC	4 cut(s)	309, 651, 846, 867
FspBI	CTAG	2 cut(s)	1029, 1065
GlaI	GCGC	4 cut(s)	802, 865, 1003, 1033
GluI	GCNGC	4 cut(s)	309, 651, 846, 867
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	2 cut(s)	1005, 1035
HaeIII	GGCC	4 cut(s)	749, 830, 869, 947
HapII	CCGG	3 cut(s)	245, 678, 1035
HgaI	GACGC	8 cut(s)	19, 80, 149, 218, 266, 396, 404, 473
HhaI	GCGC	4 cut(s)	803, 866, 1004, 1034
Hin1I	GRCGYC	4 cut(s)	83, 269, 407, 476
Hin1II	CATG	1 cut(s)	796
Hin6I	GCGC	4 cut(s)	801, 864, 1002, 1032
HinP1I	GCGC	4 cut(s)	801, 864, 1002, 1032
HincII	GTYRAC	2 cut(s)	180, 660
HindII	GTYRAC	2 cut(s)	180, 660
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	6 cut(s)	52, 194, 380, 695, 959, 965
HpaII	CCGG	3 cut(s)	245, 678, 1035
HphI	GGTGA	5 cut(s)	989, 1019, 1049, 1085, 1091
Hpy166II	GTNNAC	7 cut(s)	87, 180, 208, 273, 411, 480, 660
Hpy188III	TCNNGA	5 cut(s)	741, 793, 914, 1171, 1192
Hpy8I	GTNNAC	7 cut(s)	87, 180, 208, 273, 411, 480, 660
HpyAV	CCTTC	4 cut(s)	820, 1070, 1136, 1189
HpyCH4III	ACNGT	2 cut(s)	1013, 1043
HpyCH4IV	ACGT	3 cut(s)	83, 269, 476
HpyF3I	CTNAG	4 cut(s)	633, 963, 990, 1050
HpySE526I	ACGT	3 cut(s)	83, 269, 476
Hsp92I	GRCGYC	4 cut(s)	83, 269, 407, 476
Hsp92II	CATG	1 cut(s)	796
HspAI	GCGC	4 cut(s)	801, 864, 1002, 1032
Kzo9I	GATC	1 cut(s)	789
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	1 cut(s)	832
MaeI	CTAG	2 cut(s)	1029, 1065
MaeII	ACGT	3 cut(s)	83, 269, 476
MaeIII	GTNAC	3 cut(s)	977, 1007, 1037
MalI	GATC	1 cut(s)	791
MboI	GATC	1 cut(s)	789
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	947
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	2 cut(s)	704, 974
MmeI	TCCRAC	2 cut(s)	723, 993
MnlI	CCTC	7 cut(s)	163, 232, 349, 737, 763, 1078, 1129
Mox20I	TGGCCA	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	1187
MscI	TGGCCA	1 cut(s)	947
Msp20I	TGGCCA	1 cut(s)	947
MspI	CCGG	3 cut(s)	245, 678, 1035
MvnI	CGCG	2 cut(s)	803, 866
NdeII	GATC	1 cut(s)	789
NlaIII	CATG	1 cut(s)	796
NlaIV	GGNNCC	4 cut(s)	190, 307, 748, 774
NmeAIII	GCCGAG	2 cut(s)	840, 856
NmuCI	GTSAC	3 cut(s)	977, 1007, 1037
PagI	TCATGA	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	3 cut(s)	173, 359, 714
PdmI	GAANNNNTTC	1 cut(s)	1187
PfeI	GAWTC	4 cut(s)	52, 194, 380, 959
PflFI	GACNNNGTC	1 cut(s)	704
PkrI	GCNGC	4 cut(s)	310, 652, 847, 868
PleI	GAGTC	2 cut(s)	703, 973
PpsI	GAGTC	2 cut(s)	703, 973
PspN4I	GGNNCC	4 cut(s)	190, 307, 748, 774
PspPI	GGNCC	1 cut(s)	747
PsyI	GACNNNGTC	1 cut(s)	704
SatI	GCNGC	4 cut(s)	309, 651, 846, 867
Sau3AI	GATC	1 cut(s)	789
Sau96I	GGNCC	1 cut(s)	747
SchI	GAGTC	2 cut(s)	704, 974
SduI	GDGCHC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	204
SgrAI	CRCCGGYG	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SsiI	CCGC	6 cut(s)	309, 651, 681, 809, 839, 866
SspMI	CTAG	2 cut(s)	1029, 1065
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	1013, 1043
TaiI	ACGT	3 cut(s)	86, 272, 479
TaqI	TCGA	9 cut(s)	98, 167, 236, 284, 353, 422, 491, 708, 779
TauI	GCSGC	3 cut(s)	311, 653, 869
TfiI	GAWTC	4 cut(s)	52, 194, 380, 959
TscAI	CASTG	2 cut(s)	54, 979
TseFI	GTSAC	3 cut(s)	977, 1007, 1037
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	3 cut(s)	977, 1007, 1037
TspDTI	ATGAA	4 cut(s)	150, 474, 543, 606
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	2 cut(s)	54, 979
Tth111I	GACNNNGTC	1 cut(s)	704
XmiI	GTMKAC	5 cut(s)	86, 207, 272, 410, 479
XmnI	GAANNNNTTC	1 cut(s)	1187
XspI	CTAG	2 cut(s)	1029, 1065
ZraI	GACGTC	3 cut(s)	84, 270, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.