AT1G13930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000749
Physical Location & Seq
Forward (+)
4760957 .. 4762666
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13930.3

Sequence Viewer

Length: 468 bp
ATGAATTTCATCTCCGATCAGGTAAAGAAACTCTCAAGCTCAACACCAGAGGAGCCAGACCACAACAAGCCAGTCGAAGGAACCGAAACAGCTACAAGACCAGCTACCAACGCCGAGCTCATGGCAAGTGCCAAGGTTGTAGCTGAAGCTGCTCAAGCCGCAGCTCGTAACGAATCAGACAAACTCGACAAGGGTAAAGTCGCCGGAGCCTCTGCTGATATCTTAGACGCTGCCGAGAAATACGGTAAGTTCGATGAAAAGAGTAGCACTGGTCAGTACCTCGACAAGGCTGAGAAGTATCTCAACGACTACGAGTCGTCACACTCCACCGGTGCTGGTGGTCCTCCTCCTCCGACGAGTCAGGCTGAGCCAGCAAGTCAGCCTGAGCCGGCGGCTAAGAAAGACGATGAAGAGTCTGGTGGTGGGCTTGGAGGTTATGCCAAGATGGCTCAAGGTTTCTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.16

Weight (kDa)

4.82

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 159, 392
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 77, 286
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 1 cut(s) 463
AhdI GACNNNNNGTC 1 cut(s) 313
AluBI AGCT 7 cut(s) 39, 92, 104, 118, 143, 149, 164
AluI AGCT 7 cut(s) 39, 92, 104, 118, 143, 149, 164
Alw21I GWGCWC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 149, 161, 230
ApoI RAATTY 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 136, 173, 217
BccI CCATC 1 cut(s) 439
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 5 cut(s) 150, 159, 162, 231, 393
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 5 cut(s) 151, 160, 163, 232, 394
Bme18I GGWCC 1 cut(s) 341
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 3 cut(s) 54, 82, 208
Bpu10I CCTNAGC 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 3 cut(s) 19, 138, 435
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 286
Bse118I RCCGGY 2 cut(s) 329, 388
Bse1I ACTGG 2 cut(s) 71, 274
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 77, 286
BseMII CTCAG 3 cut(s) 282, 357, 375
BseNI ACTGG 2 cut(s) 71, 274
BseRI GAGGAG 3 cut(s) 65, 336, 339
BseXI GCAGC 3 cut(s) 136, 173, 217
BshTI ACCGGT 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 3 cut(s) 204, 330, 389
BslI CCNNNNNNNGG 2 cut(s) 77, 286
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 2 cut(s) 159, 392
BspCNI CTCAG 3 cut(s) 283, 358, 376
BspLI GGNNCC 3 cut(s) 54, 82, 208
BsrFI RCCGGY 2 cut(s) 329, 388
BsrI ACTGG 2 cut(s) 71, 274
BssAI RCCGGY 2 cut(s) 329, 388
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 372, 390
BstDEI CTNAG 5 cut(s) 223, 291, 366, 384, 396
BstENI CCTNNNNNAGG 1 cut(s) 284
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 6 cut(s) 110, 149, 155, 158, 371, 446
BstV1I GCAGC 3 cut(s) 136, 173, 217
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 372, 390
Cfr10I RCCGGY 2 cut(s) 329, 388
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 1 cut(s) 329
CviAII CATG 1 cut(s) 121
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 5 cut(s) 223, 291, 366, 384, 396
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 405
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 122, 438
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 5 cut(s) 150, 159, 162, 231, 393
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 5 cut(s) 150, 159, 162, 231, 393
GluI GCNGC 5 cut(s) 150, 159, 162, 231, 393
HapII CCGG 3 cut(s) 204, 330, 389
HgaI GACGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 124
HinfI GANTC 4 cut(s) 173, 314, 358, 413
HpaII CCGG 3 cut(s) 204, 330, 389
Hpy188I TCNGA 3 cut(s) 16, 178, 354
Hpy188III TCNNGA 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 149, 155, 158, 371, 446
HpyF3I CTNAG 5 cut(s) 223, 291, 366, 384, 396
Hsp92II CATG 1 cut(s) 124
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 52, 206
Lsp1109I GCAGC 3 cut(s) 136, 173, 217
MaeIII GTNAC 2 cut(s) 167, 318
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 4
MlyI GAGTC 3 cut(s) 323, 367, 422
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 7 cut(s) 43, 220, 290, 354, 357, 360, 425
MroNI GCCGGC 1 cut(s) 388
MspI CCGG 3 cut(s) 204, 330, 389
MwoI GCNNNNNNNGC 6 cut(s) 110, 149, 155, 158, 371, 446
NaeI GCCGGC 1 cut(s) 390
NdeII GATC 1 cut(s) 16
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 3 cut(s) 54, 82, 208
NmeAIII GCCGAG 2 cut(s) 139, 259
NmuCI GTSAC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 249
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 5 cut(s) 151, 160, 163, 232, 394
PleI GAGTC 3 cut(s) 322, 366, 421
PpsI GAGTC 3 cut(s) 322, 366, 421
Psp124BI GAGCTC 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 54, 82, 208
PspPI GGNCC 1 cut(s) 341
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 120
SatI GCNGC 5 cut(s) 150, 159, 162, 231, 393
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 3 cut(s) 323, 367, 422
SduI GDGCHC 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 3 cut(s) 34, 153, 450
SmoI CTYRAG 3 cut(s) 34, 153, 450
Sse9I AATT 1 cut(s) 4
SsiI CCGC 2 cut(s) 159, 392
SstI GAGCTC 1 cut(s) 120
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 4 cut(s) 75, 186, 252, 282
TasI AATT 1 cut(s) 4
TauI GCSGC 2 cut(s) 161, 395
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 3 cut(s) 149, 161, 230
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 3 cut(s) 17, 270, 423
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.