Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

12123605 .. 12124158

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGAAGGCGCGGTGGTGGCTGCATCTGGATCTGTGGCGTGGCTGAGGTTTGAGTCCAGTCCAGCGTTGGATCTCAGTCGGATTGGGGAGGTGTCTTGCATCGGTCGGAAGATCCGTGGATTTTGGATGTTTGGGTCTACGGTGGTGCGCGAGGTCAGGCTGGCAGGGGAGCACTGGTCCTGGGGATCTGAAGCTGGTGGTGGAGCGGCAGGAGTGGTGGGGAAGCGACGGTGCAGGTGCAGCTGGCGACGTGATTTGCCGGTGGGGCTCGTTTTGCCTGCGGCGGCCTTGGTGGAGAGCGGTGCTGCCTTGGTGGATCGTGGCGCTGAGTTTTGGTGGGGAGTGGTGGTTGGGCTGGGTCCTTGTGCTTGGGCCTTGCTGTTTGGCTGGGCTTTGGTGTTTAGTTTTTTCGTCTGTTTTTGGTTTGAGTTGTTTAGTTTTTTGCAGTATTTGGGTTGTTTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.97

Weight (kDa)

7.59

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	228
AccBSI	CCGCTC	2 cut(s)	209, 303
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	2 cut(s)	14, 153
AciI	CCGC	5 cut(s)	14, 209, 284, 287, 303
AclWI	GGATC	5 cut(s)	40, 81, 109, 196, 327
AcuI	CTGAAG	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	197, 246
AluI	AGCT	2 cut(s)	197, 246
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	5 cut(s)	40, 81, 109, 196, 327
AoxI	GGCC	2 cut(s)	288, 375
ApeKI	GCWGC	3 cut(s)	23, 243, 308
AspLEI	GCGC	3 cut(s)	14, 153, 329
AspS9I	GGNCC	3 cut(s)	180, 362, 375
AvaII	GGWCC	2 cut(s)	180, 362
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	10, 255, 295
BciT130I	CCWGG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	268
BisI	GCNGC	6 cut(s)	24, 210, 244, 285, 288, 309
BlsI	GCNGC	6 cut(s)	25, 211, 245, 286, 289, 310
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	180, 362
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	180, 362, 375
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	35, 111
Bpu10I	CCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	118, 183, 291, 312
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 336, 366
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	60, 182
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	118, 183, 291, 312
BseGI	GGATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	38, 91, 321
BseNI	ACTGG	2 cut(s)	60, 182
BseXI	GCAGC	3 cut(s)	10, 255, 295
BseYI	CCCAGC	2 cut(s)	358, 390
BsgI	GTGCAG	2 cut(s)	256, 262
Bsh1236I	CGCG	2 cut(s)	14, 153
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	290, 377
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	263
BsnI	GGCC	2 cut(s)	290, 377
Bsp1286I	GDGCHC	2 cut(s)	177, 273
Bsp143I	GATC	5 cut(s)	32, 73, 114, 188, 319
BspACI	CCGC	5 cut(s)	14, 209, 284, 287, 303
BspANI	GGCC	2 cut(s)	290, 377
BspCNI	CTCAG	3 cut(s)	39, 90, 322
BspFNI	CGCG	2 cut(s)	14, 153
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	5 cut(s)	40, 81, 109, 196, 327
BsrBI	CCGCTC	2 cut(s)	209, 303
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	60, 182
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	118, 183, 291, 312
BssMI	GATC	5 cut(s)	32, 73, 114, 188, 319
BssT1I	CCWWGG	2 cut(s)	291, 312
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	145, 234
BstC8I	GCNNGC	3 cut(s)	165, 248, 282
BstDEI	CTNAG	3 cut(s)	47, 77, 330
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	14, 153
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	14, 153, 329
BstKTI	GATC	5 cut(s)	35, 76, 117, 191, 322
BstMBI	GATC	5 cut(s)	32, 73, 114, 188, 319
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 243, 268, 277
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	14, 153
BstV1I	GCAGC	3 cut(s)	10, 255, 295
BstX2I	RGATCY	4 cut(s)	32, 73, 114, 188
BstYI	RGATCY	4 cut(s)	32, 73, 114, 188
BsuRI	GGCC	2 cut(s)	290, 377
BtgI	CCRYGG	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	165, 248, 282
CfoI	GCGC	3 cut(s)	14, 153, 329
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	180, 362, 375
DdeI	CTNAG	3 cut(s)	47, 77, 330
DpnI	GATC	5 cut(s)	34, 75, 116, 190, 321
DpnII	GATC	5 cut(s)	32, 73, 114, 188, 319
Eco130I	CCWWGG	2 cut(s)	291, 312
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	180, 362
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	2 cut(s)	291, 312
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	2 cut(s)	291, 312
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	6 cut(s)	24, 210, 244, 285, 288, 309
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	6 cut(s)	24, 210, 244, 285, 288, 309
GlaI	GCGC	3 cut(s)	13, 152, 328
GluI	GCNGC	6 cut(s)	24, 210, 244, 285, 288, 309
GsaI	CCCAGC	2 cut(s)	362, 394
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	290, 377
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	3 cut(s)	14, 153, 329
Hin6I	GCGC	3 cut(s)	12, 151, 327
HinP1I	GCGC	3 cut(s)	12, 151, 327
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	3 cut(s)	84, 111, 193
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	2 cut(s)	234, 255
HpyCH4III	ACNGT	2 cut(s)	145, 234
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	26, 102, 237, 243, 448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 243, 268, 277
HpyF3I	CTNAG	3 cut(s)	47, 77, 330
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	3 cut(s)	12, 151, 327
Kzo9I	GATC	5 cut(s)	32, 73, 114, 188, 319
LmnI	GCTCC	2 cut(s)	172, 206
Lsp1109I	GCAGC	3 cut(s)	10, 255, 295
LweI	GCATC	2 cut(s)	35, 111
MaeII	ACGT	1 cut(s)	253
MalI	GATC	5 cut(s)	34, 75, 116, 190, 321
MbiI	CCGCTC	2 cut(s)	209, 303
MboI	GATC	5 cut(s)	32, 73, 114, 188, 319
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	4 cut(s)	32, 73, 114, 188
MhlI	GDGCHC	2 cut(s)	177, 273
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	51, 62, 89
MnlI	CCTC	3 cut(s)	42, 85, 148
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	14, 153
MwoI	GCNNNNNNNGC	4 cut(s)	20, 243, 268, 277
NdeII	GATC	5 cut(s)	32, 73, 114, 188, 319
NlaIV	GGNNCC	1 cut(s)	363
PaqCI	CACCTGC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PkrI	GCNGC	6 cut(s)	25, 211, 245, 286, 289, 310
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	2 cut(s)	358, 390
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	3 cut(s)	180, 362, 375
PspPPI	RGGWCCY	1 cut(s)	362
PsuI	RGATCY	4 cut(s)	32, 73, 114, 188
PvuII	CAGCTG	1 cut(s)	246
SatI	GCNGC	6 cut(s)	24, 210, 244, 285, 288, 309
Sau3AI	GATC	5 cut(s)	32, 73, 114, 188, 319
Sau96I	GGNCC	3 cut(s)	180, 362, 375
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	177, 273
SetI	ASST	7 cut(s)	53, 96, 159, 199, 242, 248, 256
SfaNI	GCATC	2 cut(s)	35, 111
SinI	GGWCC	2 cut(s)	180, 362
SsiI	CCGC	5 cut(s)	14, 209, 284, 287, 303
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	291, 312
TaaI	ACNGT	2 cut(s)	145, 234
TaiI	ACGT	1 cut(s)	256
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	3 cut(s)	212, 287, 290
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	3 cut(s)	23, 243, 308
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	180, 362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.