RNA polymerase sigma factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 43 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AgsI | TTSAA | 2 cut(s) | 27, 41 |
| AjnI | CCWGG | 1 cut(s) | 15 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| ApoI | RAATTY | 1 cut(s) | 43 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BccI | CCATC | 1 cut(s) | 145 |
| BciT130I | CCWGG | 1 cut(s) | 17 |
| BclI | TGATCA | 1 cut(s) | 169 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 1 cut(s) | 16 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse3DI | GCAATG | 1 cut(s) | 234 |
| BseBI | CCWGG | 1 cut(s) | 17 |
| BseDI | CCNNGG | 1 cut(s) | 16 |
| BseMI | GCAATG | 1 cut(s) | 234 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsmI | GAATGC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| Bsp143I | GATC | 1 cut(s) | 169 |
| BsrDI | GCAATG | 1 cut(s) | 234 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 1 cut(s) | 16 |
| BssMI | GATC | 1 cut(s) | 169 |
| Bst2UI | CCWGG | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 1 cut(s) | 311 |
| BstKTI | GATC | 1 cut(s) | 172 |
| BstMBI | GATC | 1 cut(s) | 169 |
| BstNI | CCWGG | 1 cut(s) | 17 |
| BstNSI | RCATGY | 1 cut(s) | 217 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 2 cut(s) | 77, 214 |
| CviJI | RGCY | 1 cut(s) | 276 |
| CviKI_1 | RGCY | 1 cut(s) | 276 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DdeI | CTNAG | 1 cut(s) | 311 |
| DpnI | GATC | 1 cut(s) | 171 |
| DpnII | GATC | 1 cut(s) | 169 |
| EcoRII | CCWGG | 1 cut(s) | 15 |
| FaeI | CATG | 2 cut(s) | 80, 217 |
| FaiI | YATR | 6 cut(s) | 78, 205, 207, 209, 215, 284 |
| FatI | CATG | 2 cut(s) | 76, 213 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| Hin1II | CATG | 2 cut(s) | 80, 217 |
| HincII | GTYRAC | 1 cut(s) | 195 |
| HindII | GTYRAC | 1 cut(s) | 195 |
| Hpy166II | GTNNAC | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 2 cut(s) | 177, 261 |
| Hpy188III | TCNNGA | 2 cut(s) | 27, 48 |
| Hpy8I | GTNNAC | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 76, 104 |
| HpyF3I | CTNAG | 1 cut(s) | 311 |
| Hsp92II | CATG | 2 cut(s) | 80, 217 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 1 cut(s) | 169 |
| LpnPI | CCDG | 7 cut(s) | 2, 20, 29, 61, 237, 290, 298 |
| LweI | GCATC | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 306 |
| MalI | GATC | 1 cut(s) | 171 |
| MboI | GATC | 1 cut(s) | 169 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MluCI | AATT | 3 cut(s) | 43, 183, 243 |
| MnlI | CCTC | 2 cut(s) | 75, 255 |
| MseI | TTAA | 2 cut(s) | 92, 242 |
| MslI | CAYNNNNRTG | 2 cut(s) | 75, 218 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| Mva1269I | GAATGC | 1 cut(s) | 11 |
| MvaI | CCWGG | 1 cut(s) | 17 |
| NdeII | GATC | 1 cut(s) | 169 |
| NlaIII | CATG | 2 cut(s) | 80, 217 |
| NspI | RCATGY | 1 cut(s) | 217 |
| PctI | GAATGC | 1 cut(s) | 11 |
| Psp6I | CCWGG | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 15 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 2 cut(s) | 75, 218 |
| SaqAI | TTAA | 2 cut(s) | 92, 242 |
| Sau3AI | GATC | 1 cut(s) | 169 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SetI | ASST | 3 cut(s) | 56, 86, 317 |
| SfaNI | GCATC | 1 cut(s) | 210 |
| SgeI | CNNG | 9 cut(s) | 28, 29, 39, 47, 60, 89, 226, 236, 289 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 75, 218 |
| Sse9I | AATT | 3 cut(s) | 43, 183, 243 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| TasI | AATT | 3 cut(s) | 43, 183, 243 |
| Tru1I | TTAA | 2 cut(s) | 92, 242 |
| Tru9I | TTAA | 2 cut(s) | 92, 242 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 39 |
| XapI | RAATTY | 1 cut(s) | 43 |
| XceI | RCATGY | 1 cut(s) | 217 |