Rh2AG464700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000749
Physical Location & Seq
Reverse (-)
68280384 .. 68291304
10921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG464700.1

Sequence Viewer

Length: 252 bp
ATGAATGTAATATGCCAAAAAGAGCAAATCACGATCTTTCTTCTCTACGCCATGGAGGCCATGGACATCATCTCGAGGGAGGTGATTCACGGCGTGAGGTGGGTTTCGGTGGCGGGTATGGCTACTTCGAGGGGAGCTGGTAGCAGCTTGAGACGACGATCCAAGTTTGGCTGGCTTGCTCAGGCTTCATCGGTGCTTTCTGGTGATCGTTCCTTCAGGCGTCTTGGCTCTGGCTTGCTTGTGGCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.1

Weight (kDa)

11.18

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 94
AjiI CACGTC 1 cut(s) 249
AluBI AGCT 2 cut(s) 137, 147
AluI AGCT 2 cut(s) 137, 147
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 94, 215
AvaI CYCGRG 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbvI GCAGC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 51, 60
BseDI CCNNGG 2 cut(s) 51, 60
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 3 cut(s) 33, 158, 205
Bsp19I CCATGG 2 cut(s) 51, 60
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 51, 60
BssMI GATC 3 cut(s) 33, 158, 205
BssNI GRCGYC 1 cut(s) 220
BssT1I CCWWGG 2 cut(s) 51, 60
BstACI GRCGYC 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 173, 177, 236
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 2 cut(s) 51, 60
BstKTI GATC 3 cut(s) 36, 161, 208
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 33, 158, 205
BstMWI GCNNNNNNNGC 2 cut(s) 56, 119
BstV1I GCAGC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 2 cut(s) 51, 60
BtrI CACGTC 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 173, 177, 236
CseI GACGC 1 cut(s) 209
CviAII CATG 2 cut(s) 52, 61
CviJI RGCY 9 cut(s) 59, 122, 137, 147, 171, 175, 185, 228, 234
CviKI_1 RGCY 9 cut(s) 59, 122, 137, 147, 171, 175, 185, 228, 234
DdeI CTNAG 1 cut(s) 180
DpnI GATC 3 cut(s) 35, 160, 207
DpnII GATC 3 cut(s) 33, 158, 205
DraIII CACNNNGTG 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 51, 60
Eco57I CTGAAG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 51, 60
ErhI CCWWGG 2 cut(s) 51, 60
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 55, 64
FaiI YATR 4 cut(s) 13, 53, 62, 119
FatI CATG 2 cut(s) 51, 60
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 59
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 2 cut(s) 55, 64
HinfI GANTC 1 cut(s) 85
HphI GGTGA 2 cut(s) 94, 215
Hpy188III TCNNGA 2 cut(s) 31, 73
Hpy99I CGWCG 2 cut(s) 159, 250
HpyAV CCTTC 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 119
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 2 cut(s) 55, 64
Kzo9I GATC 3 cut(s) 33, 158, 205
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 123, 157, 167, 186, 202, 216
Lsp1109I GCAGC 1 cut(s) 156
MaeII ACGT 1 cut(s) 248
MalI GATC 3 cut(s) 35, 160, 207
MboI GATC 3 cut(s) 33, 158, 205
MboII GAAGA 1 cut(s) 32
MnlI CCTC 5 cut(s) 49, 69, 73, 90, 123
MwoI GCNNNNNNNGC 2 cut(s) 56, 119
NcoI CCATGG 2 cut(s) 51, 60
NdeII GATC 3 cut(s) 33, 158, 205
NlaIII CATG 2 cut(s) 55, 64
PaeR7I CTCGAG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 146
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 3 cut(s) 33, 158, 205
SetI ASST 5 cut(s) 84, 101, 139, 149, 251
Sfr274I CTCGAG 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 73
SmlI CTYRAG 2 cut(s) 73, 148
SmoI CTYRAG 2 cut(s) 73, 148
SsiI CCGC 1 cut(s) 113
StyI CCWWGG 2 cut(s) 51, 60
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 74, 128
TfiI GAWTC 1 cut(s) 85
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 17, 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.