Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

4545705 .. 4546175

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1065600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATCGGCATCATGGGGATGAAAGGGATGAAGAGGATGATCAGGGCGAACATCGTGAGCGGAAAATGGGAGGAGCGAAGGAGAAGGGCGGGAAGCCATCGATGGGGGAGGTGATGTCGAGCGCGAAAATTGTGGCGGGCGCGGCTAAAGGGGAGAAGTACGACAAAGCTGAGGTTTGCAAGGCTGCCAGCACCGTTCTAAGCGCTGCCTCCGCATACGGTGGTTTGGACGAGAAGGAAGGCATGGGGAGTTACATCGGCAAGGCAGAAGGTTTGCTCCGCAAGTACGGCGGTGGTGGCACAGAAGGTGAGGGAGGTGGCCACAAAACTTCTCATTCTTCAGCTTCTGAGTCGGAGGAGAGCCCTAAAAGCAAGAAAAAGCACACTAAAAAGGATGACGGTGAGGAGGAGGGTGGGCATGGTAAATTTGGGGGCTATTTAAAGATGGCTCAAGGTTTCATGAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.41

Weight (kDa)

6.19

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	2 cut(s)	125, 143
AciI	CCGC	7 cut(s)	61, 90, 137, 143, 213, 280, 291
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	161, 287
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	170, 344
AluI	AGCT	2 cut(s)	170, 344
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	185, 206
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	125, 143, 206
AsuHPI	GGTGA	3 cut(s)	124, 320, 413
BalI	TGGCCA	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	172, 193
BccI	CCATC	3 cut(s)	97, 106, 439
BceAI	ACGGC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	3 cut(s)	144, 186, 207
BlsI	GCNGC	3 cut(s)	145, 187, 208
BmsI	GCATC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	101
BseGI	GGATG	4 cut(s)	25, 34, 43, 400
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	162, 339
BseRI	GAGGAG	4 cut(s)	87, 371, 419, 422
BseXI	GCAGC	2 cut(s)	172, 193
Bsh1236I	CGCG	2 cut(s)	125, 143
BshFI	GGCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	4, 40
BspACI	CCGC	7 cut(s)	61, 90, 137, 143, 213, 280, 291
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	163, 340
BspDI	ATCGAT	1 cut(s)	101
BspFNI	CGCG	2 cut(s)	125, 143
BspHI	TCATGA	1 cut(s)	459
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	61
BssMI	GATC	2 cut(s)	4, 40
Bst4CI	ACNGT	3 cut(s)	196, 221, 401
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	139, 190
BstDEI	CTNAG	3 cut(s)	171, 200, 348
BstF5I	GGATG	4 cut(s)	25, 34, 43, 400
BstFNI	CGCG	2 cut(s)	125, 143
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	3 cut(s)	125, 143, 206
BstKTI	GATC	2 cut(s)	7, 43
BstMBI	GATC	2 cut(s)	4, 40
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 212, 288, 297, 369
BstUI	CGCG	2 cut(s)	125, 143
BstV1I	GCAGC	2 cut(s)	172, 193
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	101
BtsCI	GGATG	4 cut(s)	25, 34, 43, 400
Cac8I	GCNNGC	2 cut(s)	139, 190
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	3 cut(s)	125, 143, 206
ClaI	ATCGAT	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	160, 286
CviAII	CATG	4 cut(s)	14, 244, 419, 460
CviJI	RGCY	9 cut(s)	97, 146, 170, 185, 321, 344, 363, 435, 449
CviKI_1	RGCY	9 cut(s)	97, 146, 170, 185, 321, 344, 363, 435, 449
CviQI	GTAC	2 cut(s)	160, 286
DdeI	CTNAG	3 cut(s)	171, 200, 348
DpnI	GATC	2 cut(s)	6, 42
DpnII	GATC	2 cut(s)	4, 40
DraI	TTTAAA	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	365
Eco47III	AGCGCT	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	365
FaeI	CATG	4 cut(s)	17, 247, 422, 463
FaiI	YATR	5 cut(s)	15, 217, 245, 420, 461
FatI	CATG	4 cut(s)	13, 243, 418, 459
FauI	CCCGC	2 cut(s)	83, 130
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	144, 186, 207
FokI	GGATG	4 cut(s)	32, 41, 50, 407
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	144, 186, 207
GlaI	GCGC	3 cut(s)	124, 142, 205
GluI	GCNGC	3 cut(s)	144, 186, 207
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	321
HhaI	GCGC	3 cut(s)	125, 143, 206
Hin1II	CATG	4 cut(s)	17, 247, 422, 463
Hin6I	GCGC	3 cut(s)	123, 141, 204
HinP1I	GCGC	3 cut(s)	123, 141, 204
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	3 cut(s)	124, 320, 413
Hpy188I	TCNGA	2 cut(s)	349, 355
Hpy188III	TCNNGA	2 cut(s)	56, 460
HpyAV	CCTTC	7 cut(s)	73, 79, 229, 233, 263, 299, 457
HpyCH4III	ACNGT	3 cut(s)	196, 221, 401
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 212, 288, 297, 369
HpyF3I	CTNAG	3 cut(s)	171, 200, 348
Hsp92II	CATG	4 cut(s)	17, 247, 422, 463
HspAI	GCGC	3 cut(s)	123, 141, 204
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	4, 40
LmnI	GCTCC	2 cut(s)	74, 282
LpnPI	CCDG	2 cut(s)	29, 202
Lsp1109I	GCAGC	2 cut(s)	172, 193
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	6, 42
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	2 cut(s)	4, 40
MboII	GAAGA	2 cut(s)	44, 330
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	129, 425
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	333
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	321
MvnI	CGCG	2 cut(s)	125, 143
MwoI	GCNNNNNNNGC	5 cut(s)	143, 212, 288, 297, 369
NdeII	GATC	2 cut(s)	4, 40
NlaIII	CATG	4 cut(s)	17, 247, 422, 463
PagI	TCATGA	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	145, 187, 208
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	161, 287
RsaNI	GTAC	2 cut(s)	160, 286
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	144, 186, 207
Sau3AI	GATC	2 cut(s)	4, 40
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	8 cut(s)	114, 172, 177, 274, 310, 319, 346, 457
SfaNI	GCATC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	129, 425
SsiI	CCGC	7 cut(s)	61, 90, 137, 143, 213, 280, 291
TaaI	ACNGT	3 cut(s)	196, 221, 401
TaqI	TCGA	2 cut(s)	101, 119
TasI	AATT	2 cut(s)	129, 425
TauI	GCSGC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TseI	GCWGC	2 cut(s)	185, 206
TspDTI	ATGAA	3 cut(s)	36, 45, 448
XapI	RAATTY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.