Rw5G027470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000749
Physical Location & Seq
Reverse (-)
40607078 .. 40614437
7360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027470.1

Sequence Viewer

Length: 183 bp
ATGGATGACAACGGACGCTCTCCTTCAACTGTGGTTGCACAAGGGAATCAATATAGTGCAATTAACTCGAGGAGGTGGAAAACATGGTACAACAGTGAGTCTTTTGTTTATGATACTTTGTTTGATAGGCTGCTGATTAGATATCAAGTGCTCAACAAACCAAGAGAGGCCAACACCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

7.09

Weight (kDa)

9.3

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 27
Alw21I GWGCWC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 67
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 67
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 67
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 31, 95
BstF5I GGATG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 100
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 84
CviJI RGCY 2 cut(s) 130, 170
CviKI_1 RGCY 2 cut(s) 130, 170
CviQI GTAC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 143
FaeI CATG 1 cut(s) 87
FaiI YATR 4 cut(s) 54, 85, 111, 181
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 170
HgaI GACGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 87
HinfI GANTC 2 cut(s) 46, 98
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 31, 95
HpyCH4V TGCA 2 cut(s) 38, 59
Hsp92II CATG 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 63, 66, 160
MseI TTAA 1 cut(s) 63
NlaIII CATG 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 67
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 67
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 131
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 153
SetI ASST 2 cut(s) 77, 179
Sfr274I CTCGAG 1 cut(s) 67
SgeI CNNG 6 cut(s) 53, 79, 81, 96, 158, 174
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 1 cut(s) 60
TaaI ACNGT 2 cut(s) 31, 95
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.