Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

44717513 .. 44718178

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGTTCACTATTCTCTCTTCGCTTACTGATTTAGCGAAGCACAATAGAACAGCTTCAAGTCTGAGATTATTTGAGGATCTCTACTTACAGAGGTTGCTCTCTAGAAAGCAAGAAGAAGTCGGAGGCAAGGAGGACTCCCATGATCTTTTCCTCTCGTCCGACGGCGGTCGACGACGGTGTTGGCTGTTCTGGCTCGCTGTTGTTGTATCAATCTTTCTTCTCTACACCATGGAGGCCATGGACATCATCTCGAGGGAGGCGATTCATGGCGTGAGGTGGGTTTCGGCGATGGGGATGGCTACTTTGGGGGGAGCTGGTAGCGGCTTGAGACGGCGATCCAAGTTTGGCTGGCTTGCTCAGGCTTTATCGGTGCTTTCTGGTGATCGTTCATTCAGGCGTCCTCGCTTTGGCTTGCTTGCGGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

10.5

Isoelectric Point (pI)

70.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	4 cut(s)	168, 324, 422, 425
AclWI	GGATC	2 cut(s)	87, 333
AcyI	GRCGYC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	60
AluBI	AGCT	2 cut(s)	56, 317
AluI	AGCT	2 cut(s)	56, 317
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	87, 333
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	253
BccI	CCATC	2 cut(s)	286, 292
BceAI	ACGGC	2 cut(s)	181, 350
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	325, 423
BlsI	GCNGC	2 cut(s)	326, 424
BmeT110I	CYCGRG	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	231, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	231, 240
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	56, 374
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	79, 145, 338, 385
Bsp19I	CCATGG	2 cut(s)	231, 240
BspACI	CCGC	4 cut(s)	168, 324, 422, 425
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	57, 373
BspPI	GGATC	2 cut(s)	87, 333
BssECI	CCNNGG	2 cut(s)	231, 240
BssMI	GATC	4 cut(s)	79, 145, 338, 385
BssNI	GRCGYC	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	231, 240
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	400
BstC8I	GCNNGC	5 cut(s)	198, 353, 357, 416, 420
BstDEI	CTNAG	2 cut(s)	65, 360
BstDSI	CCRYGG	2 cut(s)	231, 240
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	4 cut(s)	82, 148, 341, 388
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	79, 145, 338, 385
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	2 cut(s)	231, 240
BtgZI	GCGATG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	5 cut(s)	198, 353, 357, 416, 420
CseI	GACGC	1 cut(s)	389
CviAII	CATG	4 cut(s)	143, 232, 241, 269
DdeI	CTNAG	2 cut(s)	65, 360
DpnI	GATC	4 cut(s)	81, 147, 340, 387
DpnII	GATC	4 cut(s)	79, 145, 338, 385
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	231, 240
Eco88I	CYCGRG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	231, 240
ErhI	CCWWGG	2 cut(s)	231, 240
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	146, 235, 244, 272
FaiI	YATR	4 cut(s)	144, 233, 242, 270
FatI	CATG	4 cut(s)	142, 231, 240, 268
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	325, 423
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	325, 423
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	325, 423
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	400
Hin1II	CATG	4 cut(s)	146, 235, 244, 272
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	137, 265
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	9, 173
Hpy188I	TCNGA	3 cut(s)	66, 125, 163
Hpy188III	TCNNGA	2 cut(s)	105, 253
Hpy8I	GTNNAC	2 cut(s)	9, 173
Hpy99I	CGWCG	3 cut(s)	167, 177, 180
HpyCH4III	ACNGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	65, 360
Hsp92I	GRCGYC	1 cut(s)	400
Hsp92II	CATG	4 cut(s)	146, 235, 244, 272
Kzo9I	GATC	4 cut(s)	79, 145, 338, 385
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	6 cut(s)	178, 303, 337, 347, 366, 382
MaeI	CTAG	1 cut(s)	105
MalI	GATC	4 cut(s)	81, 147, 340, 387
MboI	GATC	4 cut(s)	79, 145, 338, 385
MboII	GAAGA	3 cut(s)	12, 128, 212
MflI	RGATCY	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	103, 186
MroXI	GAANNNNTTC	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	231, 240
NdeII	GATC	4 cut(s)	79, 145, 338, 385
NlaIII	CATG	4 cut(s)	146, 235, 244, 272
PaeR7I	CTCGAG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	326, 424
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	171
SatI	GCNGC	2 cut(s)	325, 423
Sau3AI	GATC	4 cut(s)	79, 145, 338, 385
SchI	GAGTC	1 cut(s)	131
SetI	ASST	4 cut(s)	58, 98, 281, 319
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	253, 328
SmoI	CTYRAG	2 cut(s)	253, 328
SsiI	CCGC	4 cut(s)	168, 324, 422, 425
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	231, 240
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	172, 254
TauI	GCSGC	2 cut(s)	327, 425
TfiI	GAWTC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	257, 381
XbaI	TCTAGA	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.