Rh7DG293600

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016458
Physical Location & Seq
Reverse (-)
33169868 .. 33170889
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG293600.1

Sequence Viewer

Length: 429 bp
ATGTTGGAGAAACAAATCTATTCTCTGTTGACGGAATATAAAGAAAGTAGAGATGCTCTCCTAACCTGTAAGGACATAAGGAAGGTGGTACCTCCTTTGTTTGAACATCAATTTGTTGCCTCCGCTTTAATTGCTTGCATGAAGAATTTGGGAGAACCACCATGGGTAATATATCTATTAAAGGAGGCAGCTGGGGTAGGAGTGATTAGTTCATCTCAGATGGTGAAGGGCTTTATTCAAGTTGAAGAGAGACTTGCTGTCCTTTGTTTGCATGATTCATCAGCAGCAAATATGTTCCAGTCGTTGATCTCCAAGGCCATTTCTGATGGTTGGCTGGATAATTCCCTTGTAGAATCATTTGGTAAATATTTTGCGATACGTACAAAAAAGACATTGTCTCCATTTGATGCTTTTCAATTCGTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

6.72

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 2 - 113 1.8e-10 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 88
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 2 cut(s) 90, 382
AgsI TTSAA 4 cut(s) 104, 239, 245, 416
AhdI GACNNNNNGTC 1 cut(s) 257
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 244, 402
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 188, 284
ApoI RAATTY 1 cut(s) 145
Asp718I GGTACC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 235
BanI GGYRCC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 200, 296
BccI CCATC 2 cut(s) 214, 320
BcoDI GTCTC 2 cut(s) 244, 402
BisI GCNGC 2 cut(s) 189, 285
BlsI GCNGC 2 cut(s) 190, 286
BmeRI GACNNNNNGTC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 2 cut(s) 43, 397
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BsaAI YACGTR 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 161, 312
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 161, 312
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 200, 296
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 244, 402
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 306
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 161, 312
BssMI GATC 1 cut(s) 306
BssT1I CCWWGG 2 cut(s) 161, 312
Bst6I CTCTTC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 161
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 244, 402
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSNI TACGTA 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 200, 296
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 89, 381
CviAII CATG 3 cut(s) 139, 162, 272
CviJI RGCY 4 cut(s) 191, 231, 317, 334
CviKI_1 RGCY 4 cut(s) 191, 231, 317, 334
CviQI GTAC 2 cut(s) 89, 381
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
DriI GACNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 240
Eco105I TACGTA 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 161, 312
EcoT14I CCWWGG 2 cut(s) 161, 312
ErhI CCWWGG 2 cut(s) 161, 312
FaeI CATG 3 cut(s) 142, 165, 275
FaiI YATR 7 cut(s) 39, 77, 140, 163, 172, 273, 293
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 3 cut(s) 138, 161, 271
Fnu4HI GCNGC 2 cut(s) 189, 285
Fsp4HI GCNGC 2 cut(s) 189, 285
GluI GCNGC 2 cut(s) 189, 285
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 3 cut(s) 142, 165, 275
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 275, 353
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 219, 325
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 76, 220
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 138, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 3 cut(s) 142, 165, 275
KpnI GGTACC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 4 cut(s) 79, 177, 311, 320
Lsp1109I GCAGC 2 cut(s) 200, 296
LweI GCATC 2 cut(s) 43, 397
MaeII ACGT 1 cut(s) 379
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 2 cut(s) 154, 257
MluCI AATT 5 cut(s) 110, 129, 145, 340, 416
MnlI CCTC 3 cut(s) 102, 130, 178
MseI TTAA 3 cut(s) 128, 179, 427
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 161
NdeII GATC 1 cut(s) 306
NlaIII CATG 3 cut(s) 142, 165, 275
NlaIV GGNNCC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 275, 353
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 190, 286
Ppu21I YACGTR 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 90, 382
RsaNI GTAC 2 cut(s) 89, 381
SaqAI TTAA 3 cut(s) 128, 179, 427
SatI GCNGC 2 cut(s) 189, 285
Sau3AI GATC 1 cut(s) 306
SetI ASST 5 cut(s) 68, 87, 94, 193, 382
SfaNI GCATC 2 cut(s) 43, 397
SnaBI TACGTA 1 cut(s) 380
Sse9I AATT 5 cut(s) 110, 129, 145, 340, 416
SsiI CCGC 1 cut(s) 123
SspI AATATT 1 cut(s) 368
StyI CCWWGG 2 cut(s) 161, 312
TaiI ACGT 1 cut(s) 382
TasI AATT 5 cut(s) 110, 129, 145, 340, 416
TfiI GAWTC 2 cut(s) 275, 353
Tru1I TTAA 3 cut(s) 128, 179, 427
Tru9I TTAA 3 cut(s) 128, 179, 427
TseI GCWGC 2 cut(s) 188, 284
TspDTI ATGAA 3 cut(s) 155, 201, 267
TspGWI ACGGA 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 394
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.