RchiOBHm_Chr7g0215421

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016458
Physical Location & Seq
Forward (+)
33057559 .. 33060112
2554 bp
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UTR
Exon/CDS
Intron
PRQ19274

Sequence Viewer

Length: 297 bp
ATGCCGAATCAGTATCATCCTTCCTTCGTTAAGGGACTCGTTTCCATGGCAATGTCCAGGGATGATGAGAAGAAGGAGATTTCTTCATCTTTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGTGCATATTGAAGATGGATTCAACTTACTACTGCGCTCTGCTGATGTACTGGATGCAGTAGACATTCTCCCTCTTTTCCTTGGTCGTGCAGTGGTTGATTCTATCCTTCCTTCAGCCTTCATCACCAGTGCAAAGGAAGCTGATGAGCTCGAAATGAGTTCTCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

98

Amino Acids

10.68

Weight (kDa)

4.4

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 1 - 79 6.8e-09 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 137, 148
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 266, 274
AluI AGCT 2 cut(s) 266, 274
Alw21I GWGCWC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 241
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 169
BsaJI CCNNGG 3 cut(s) 45, 57, 205
Bse1I ACTGG 2 cut(s) 180, 252
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 45, 57, 205
BseGI GGATG 3 cut(s) 16, 67, 184
BseMI GCAATG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 180, 252
BsgI GTGCAG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 2 cut(s) 180, 252
BssECI CCNNGG 3 cut(s) 45, 57, 205
BssT1I CCWWGG 2 cut(s) 45, 205
Bst2UI CCWGG 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 16, 67, 184
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 107, 263
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 16, 67, 184
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 259
CfoI GCGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 123, 242, 266, 274
CviKI_1 RGCY 4 cut(s) 123, 242, 266, 274
CviQI GTAC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 45, 205
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 45, 205
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 45, 205
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 108, 132
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 45
FblI GTMKAC 1 cut(s) 186
FokI GGATG 3 cut(s) 3, 74, 191
FriOI GRGCYC 1 cut(s) 276
GlaI GCGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 4 cut(s) 7, 36, 144, 224
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 6 cut(s) 30, 34, 67, 242, 246, 253
HpyCH4V TGCA 4 cut(s) 130, 182, 215, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 263
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 43, 70, 138, 161, 265
LweI GCATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 75, 82, 149
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 207
MseI TTAA 2 cut(s) 30, 295
MslI CAYNNNNRTG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 107, 263
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
PfeI GAWTC 3 cut(s) 7, 144, 224
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 30, 295
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 276
SetI ASST 2 cut(s) 268, 276
SfaNI GCATC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 292
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 45, 205
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 3 cut(s) 7, 144, 224
Tru1I TTAA 2 cut(s) 30, 295
Tru9I TTAA 2 cut(s) 30, 295
TscAI CASTG 2 cut(s) 222, 259
TspDTI ATGAA 2 cut(s) 75, 235
TspRI CASTG 2 cut(s) 222, 259
XmiI GTMKAC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.