Rorug07G0153500

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016458
Physical Location & Seq
Forward (+)
12182634 .. 12183492
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0153500.1

Sequence Viewer

Length: 672 bp
ATGGCTGAGAAGTCCGACCATGAGATGACTTATCCTTTAACCCCATTTGATGGTTACGAGCGAATTGATGGAGAGTCTTTTGTATCCAGAGATGAGCTACAACGCAAGAAGAGAATGAAATTGTTTATCTATATTGCAATCTTCGTTGCGTTTCAGACCATAGTCATCACCGTACTTGCTCTCACCGTCATGCAAGCTCACGTGCCCAGGGCCCTGTTGAACAAAATCGACGTCCAAACCCTCAACTATAACCCTGCAACACCTTCATTCAACATGAGCTTCACAACCGAAATCTGGATCAAGAACATAAATTGGGGTCCTTTTAAGTTTGGTTCAGGCATAGTTCAATTTTTTTACCACGATACTAAAAATTCTAAAATTATTGTTCCTATTGGGGAAGCTGTTATTCCAAGCGGCAAGGTTAAAATGCGTTCGACCAAGAAGATCAATGTCGAGGTGAGATTGAATTCCGATGCATTGCAAAGTCACAGTTCGGATCTCAGAAGTGAATTGAACAGAGGGGTGATATATCTGAGGAGTGGGGTTCAATTGCACGGACATCTCTATTTGATGTATATATTGAAGAAATCCAAGTATGCTGTAATGGACTGTGAACCCGATTTTGATTTATCTACTAAGACAGTCACTATCGCTCATATGCATATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

223

Amino Acids

25.56

Weight (kDa)

9.18

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 414
AclWI GGATC 2 cut(s) 305, 504
AcsI RAATTY 2 cut(s) 370, 466
AcvI CACGTG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 50, 294
AgsI TTSAA 7 cut(s) 220, 271, 347, 466, 514, 548, 583
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 4 cut(s) 97, 197, 279, 401
AluI AGCT 4 cut(s) 97, 197, 279, 401
AlwI GGATC 2 cut(s) 305, 504
AoxI GGCC 1 cut(s) 210
ApaI GGGCCC 1 cut(s) 214
ApoI RAATTY 2 cut(s) 370, 466
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspS9I GGNCC 3 cut(s) 210, 211, 317
AsuHPI GGTGA 4 cut(s) 160, 175, 469, 535
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 207, 214
BanII GRGCYC 1 cut(s) 214
BbrPI CACGTG 1 cut(s) 202
BccI CCATC 2 cut(s) 44, 62
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 1 cut(s) 94
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 210, 211, 317
BmiI GGNNCC 2 cut(s) 212, 318
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 206, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 294
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 206, 207
BseLI CCNNNNNNNGG 2 cut(s) 50, 294
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 514, 524
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 2 cut(s) 207, 214
BshFI GGCC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 50, 294
BsnI GGCC 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 207, 214
Bsp143I GATC 3 cut(s) 297, 444, 496
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 513, 525
BspLI GGNNCC 2 cut(s) 212, 318
BspPI GGATC 2 cut(s) 305, 504
BsrDI GCAATG 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 206, 207
BssMI GATC 3 cut(s) 297, 444, 496
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 5 cut(s) 172, 187, 491, 611, 643
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 4 cut(s) 6, 500, 533, 636
BstKTI GATC 3 cut(s) 300, 447, 499
BstMBI GATC 3 cut(s) 297, 444, 496
BstNI CCWGG 1 cut(s) 208
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 2 cut(s) 207, 214
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 3 cut(s) 210, 211, 317
Csp6I GTAC 1 cut(s) 173
CviAII CATG 3 cut(s) 20, 190, 274
CviJI RGCY 6 cut(s) 5, 97, 197, 212, 279, 401
CviKI_1 RGCY 6 cut(s) 5, 97, 197, 212, 279, 401
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 4 cut(s) 6, 500, 533, 636
DpnI GATC 3 cut(s) 299, 446, 498
DpnII GATC 3 cut(s) 297, 444, 496
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 317
Eco72I CACGTG 1 cut(s) 202
EcoO109I RGGNCCY 3 cut(s) 210, 211, 317
EcoRI GAATTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 206
EcoT22I ATGCAT 2 cut(s) 478, 663
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 3 cut(s) 23, 193, 277
FatI CATG 3 cut(s) 19, 189, 273
FauNDI CATATG 1 cut(s) 657
Fnu4HI GCNGC 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 415
GluI GCNGC 1 cut(s) 415
HaeIII GGCC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 23, 193, 277
HinfI GANTC 1 cut(s) 74
HphI GGTGA 4 cut(s) 160, 175, 469, 535
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 6 cut(s) 16, 156, 472, 496, 503, 534
Hpy188III TCNNGA 3 cut(s) 87, 295, 301
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 5 cut(s) 172, 187, 491, 611, 643
HpyCH4IV ACGT 2 cut(s) 201, 231
HpyCH4V TGCA 7 cut(s) 137, 193, 257, 476, 481, 553, 661
HpyF3I CTNAG 4 cut(s) 6, 500, 533, 636
HpySE526I ACGT 2 cut(s) 201, 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 23, 193, 277
Kzo9I GATC 3 cut(s) 297, 444, 496
LpnPI CCDG 7 cut(s) 100, 193, 220, 227, 267, 280, 321
LweI GCATC 1 cut(s) 463
MaeII ACGT 2 cut(s) 201, 231
MaeIII GTNAC 3 cut(s) 53, 485, 643
MalI GATC 3 cut(s) 299, 446, 498
MboI GATC 3 cut(s) 297, 444, 496
MboII GAAGA 4 cut(s) 121, 133, 454, 595
MfeI CAATTG 1 cut(s) 548
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 207, 214
MluCI AATT 9 cut(s) 63, 119, 310, 347, 370, 378, 466, 509, 548
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 251, 448, 512, 528
Mph1103I ATGCAT 2 cut(s) 478, 663
MseI TTAA 3 cut(s) 38, 324, 423
MslI CAYNNNNRTG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 657
NdeII GATC 3 cut(s) 297, 444, 496
NlaIII CATG 3 cut(s) 23, 193, 277
NlaIV GGNNCC 2 cut(s) 212, 318
NmuCI GTSAC 2 cut(s) 485, 643
NsiI ATGCAT 2 cut(s) 478, 663
PasI CCCWGGG 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 1 cut(s) 82
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 206
PspCI CACGTG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 212, 318
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 3 cut(s) 210, 211, 317
PspPPI RGGWCCY 1 cut(s) 317
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 38, 324, 423
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 3 cut(s) 297, 444, 496
Sau96I GGNCC 3 cut(s) 210, 211, 317
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 2 cut(s) 207, 214
SetI ASST 9 cut(s) 99, 199, 204, 234, 265, 281, 403, 423, 459
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 9 cut(s) 63, 119, 310, 347, 370, 378, 466, 509, 548
SsiI CCGC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 5 cut(s) 172, 187, 491, 611, 643
TaiI ACGT 2 cut(s) 204, 234
TaqI TCGA 3 cut(s) 228, 434, 453
TasI AATT 9 cut(s) 63, 119, 310, 347, 370, 378, 466, 509, 548
TauI GCSGC 1 cut(s) 417
Tru1I TTAA 3 cut(s) 38, 324, 423
Tru9I TTAA 3 cut(s) 38, 324, 423
TseFI GTSAC 2 cut(s) 485, 643
Tsp45I GTSAC 2 cut(s) 485, 643
TspDTI ATGAA 2 cut(s) 131, 255
TspGWI ACGGA 1 cut(s) 570
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 370, 466
ZraI GACGTC 1 cut(s) 232
Zsp2I ATGCAT 2 cut(s) 478, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.