RchiOBHm_Chr7g0223101

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012904
Physical Location & Seq
Forward (+)
44740336 .. 44744097
3762 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGGCCCTCCCAGTGAAGCTTGAGAGTTCTTCTTTCTCTTTGGTGCCCTCAGATTCAAAGCATGTGATCAGAGTCACGTTAAATCGAATCCCAGAAAACCCACTATTCCCAGATTCTCTGTGCACGCTCATGGTCTGCCAGAAGAAGTTTCACCAGAAAAGACTCCAAATTCCGGGGCTTACTGCTATTCTTCAACACCGCAAAATCGGTCCACACAATCCTGGGCTCCTTGATCACCTGAATTTCACTAGTCTGGACCAATTCATTGATCTCCCTCAACTTCGTGCGCATCTAGGCACTCTCTCGTCTTCCCTCAAGCCCGAGATTCCGACTCTGTATGAGGATCTGGCCCCCCAGATTTCGGCTCTTGCGACTCGTTCGGCGGCAATGCCCTTCTGCATCAGTGCTGAAATCGACATCTTCTTCACTGATTATGTTGGTCAAAACGGTGACCTTGATTCGAGTAGTACTGACTTGGATGCTCTGTTTGAGAGAATTGCATCTACTGCTGAAGGTTCAACTGTTCTGGACAAATTCATGGCTAGTAGCTTTGTGGCCGGGAAGGATTCGGATAAGTGCACTATTTGTATGGAGGAGGAGTTTGATGGGACTTCTAATCTCATTCGAACCCCGTGCGCTCATGCCTTTCACAAATCATGCGTTGTTCGGTGGTTGATCATGAACAAGAACACATGTCCCTTGTGCCGCAGTCAACTCCTCGATTGTCTCCATCCAACCACCATATCTCTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

251

Amino Acids

27.8

Weight (kDa)

5.96

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 190 - 239 7.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 191 - 236 6.1e-13 Ring finger domain
zf-rbx1 PF12678 192 - 236 5e-09 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 192 - 235 1.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 192 - 236 9.8e-06 zinc-RING finger domain
zf-C3HC4 PF00097 193 - 235 3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 193 - 221 1.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 3 cut(s) 199, 383, 706
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 3 cut(s) 168, 241, 533
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 172, 361
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 3 cut(s) 57, 194, 519
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 19, 549
AluI AGCT 2 cut(s) 19, 549
Alw21I GWGCWC 2 cut(s) 125, 581
Alw26I GTCTC 1 cut(s) 731
Alw44I GTGCAC 2 cut(s) 121, 577
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 3, 348, 555
ApaLI GTGCAC 2 cut(s) 121, 577
ApoI RAATTY 3 cut(s) 168, 241, 533
AspLEI GCGC 2 cut(s) 289, 638
AspS9I GGNCC 4 cut(s) 4, 209, 256, 349
AsuC2I CCSGG 2 cut(s) 174, 559
AsuHPI GGTGA 3 cut(s) 143, 227, 461
AsuII TTCGAA 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 209, 256
BaeGI GKGCMC 3 cut(s) 48, 125, 581
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 125, 581
BccI CCATC 2 cut(s) 599, 738
BcgI CGANNNNNNTGC 2 cut(s) 615, 649
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 3 cut(s) 66, 232, 675
BcnI CCSGG 2 cut(s) 174, 559
BcoDI GTCTC 1 cut(s) 731
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 3 cut(s) 249, 293, 543
BisI GCNGC 2 cut(s) 384, 706
BlsI GCNGC 2 cut(s) 385, 707
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 174, 222, 559
Bme18I GGWCC 2 cut(s) 209, 256
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 4, 209, 256, 349
BmiI GGNNCC 3 cut(s) 45, 227, 351
BmrFI CCNGG 3 cut(s) 174, 222, 559
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 4 cut(s) 298, 408, 469, 509
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 2 cut(s) 41, 299
BpuMI CCSGG 2 cut(s) 174, 559
BsaJI CCNNGG 2 cut(s) 173, 221
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 361
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 173, 221
BseGI GGATG 2 cut(s) 484, 730
BseLI CCNNNNNNNGG 2 cut(s) 172, 361
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 3 cut(s) 608, 611, 707
BseSI GKGCMC 3 cut(s) 48, 125, 581
BshFI GGCC 3 cut(s) 5, 350, 557
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 125, 581
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 173, 558
BslFI GGGAC 2 cut(s) 622, 681
BslI CCNNNNNNNGG 2 cut(s) 172, 361
BsmAI GTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 622, 681
BsnI GGCC 3 cut(s) 5, 350, 557
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 4 cut(s) 48, 125, 228, 581
Bsp143I GATC 5 cut(s) 66, 232, 268, 343, 675
BspACI CCGC 3 cut(s) 199, 383, 706
BspANI GGCC 3 cut(s) 5, 350, 557
BspCNI CTCAG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 45, 227, 351
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 173, 221
BssMI GATC 5 cut(s) 66, 232, 268, 343, 675
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 449, 523
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 49
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 2 cut(s) 484, 730
BstHHI GCGC 2 cut(s) 289, 638
BstKTI GATC 5 cut(s) 69, 235, 271, 346, 678
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 5 cut(s) 66, 232, 268, 343, 675
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 65, 696
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 172, 220, 557
BstSLI GKGCMC 3 cut(s) 48, 125, 581
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 3 cut(s) 5, 350, 557
BtsCI GGATG 2 cut(s) 484, 730
BtsIMutI CAGTG 3 cut(s) 18, 409, 426
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 678
CfoI GCGC 2 cut(s) 289, 638
Cfr13I GGNCC 4 cut(s) 4, 209, 256, 349
Csp6I GTAC 1 cut(s) 468
CviAII CATG 7 cut(s) 62, 130, 538, 641, 657, 679, 693
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 1 cut(s) 49
DpnI GATC 5 cut(s) 68, 234, 270, 345, 677
DpnII GATC 5 cut(s) 66, 232, 268, 343, 675
EaeI YGGCCR 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 209, 256
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 7 cut(s) 65, 133, 541, 644, 660, 682, 696
FaqI GGGAC 2 cut(s) 622, 681
FatI CATG 7 cut(s) 61, 129, 537, 640, 656, 678, 692
FbaI TGATCA 3 cut(s) 66, 232, 675
Fnu4HI GCNGC 2 cut(s) 384, 706
FokI GGATG 2 cut(s) 491, 717
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 384, 706
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 3 cut(s) 249, 293, 543
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 288, 637
GluI GCNGC 2 cut(s) 384, 706
HaeIII GGCC 3 cut(s) 5, 350, 557
HapII CCGG 2 cut(s) 173, 558
HhaI GCGC 2 cut(s) 289, 638
Hin1II CATG 7 cut(s) 65, 133, 541, 644, 660, 682, 696
Hin6I GCGC 2 cut(s) 287, 636
HinP1I GCGC 2 cut(s) 287, 636
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 2 cut(s) 173, 558
HphI GGTGA 3 cut(s) 143, 227, 461
Hpy166II GTNNAC 4 cut(s) 123, 212, 579, 713
Hpy188I TCNGA 4 cut(s) 52, 71, 330, 571
Hpy188III TCNNGA 3 cut(s) 254, 527, 679
Hpy8I GTNNAC 4 cut(s) 123, 212, 579, 713
HpyAV CCTTC 3 cut(s) 403, 506, 556
HpyCH4III ACNGT 2 cut(s) 449, 523
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 123, 399, 500, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 7 cut(s) 65, 133, 541, 644, 660, 682, 696
HspAI GCGC 2 cut(s) 287, 636
Ksp22I TGATCA 3 cut(s) 66, 232, 675
Kzo9I GATC 5 cut(s) 66, 232, 268, 343, 675
LmnI GCTCC 1 cut(s) 231
LweI GCATC 4 cut(s) 298, 408, 469, 509
MaeI CTAG 3 cut(s) 249, 293, 543
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 73, 449
MalI GATC 5 cut(s) 68, 234, 270, 345, 677
MboI GATC 5 cut(s) 66, 232, 268, 343, 675
MboII GAAGA 6 cut(s) 21, 154, 182, 300, 412, 415
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 4 cut(s) 48, 125, 228, 581
MluCI AATT 5 cut(s) 168, 241, 260, 495, 533
MlyI GAGTC 4 cut(s) 81, 156, 325, 367
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 8 cut(s) 17, 58, 285, 323, 334, 586, 589, 728
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 173, 558
MspR9I CCNGG 3 cut(s) 174, 222, 559
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 2 cut(s) 174, 559
NdeII GATC 5 cut(s) 66, 232, 268, 343, 675
NlaIII CATG 7 cut(s) 65, 133, 541, 644, 660, 682, 696
NlaIV GGNNCC 3 cut(s) 45, 227, 351
NmuCI GTSAC 2 cut(s) 73, 449
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 2 cut(s) 65, 696
NspV TTCGAA 1 cut(s) 625
PagI TCATGA 1 cut(s) 678
PciI ACATGT 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
PkrI GCNGC 2 cut(s) 385, 707
PleI GAGTC 4 cut(s) 80, 156, 325, 367
PpsI GAGTC 4 cut(s) 80, 156, 325, 367
PscI ACATGT 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 45, 227, 351
PspPI GGNCC 4 cut(s) 4, 209, 256, 349
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 384, 706
Sau3AI GATC 5 cut(s) 66, 232, 268, 343, 675
Sau96I GGNCC 4 cut(s) 4, 209, 256, 349
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 4 cut(s) 81, 156, 325, 367
ScrFI CCNGG 3 cut(s) 174, 222, 559
SduI GDGCHC 4 cut(s) 48, 125, 228, 581
SetI ASST 6 cut(s) 21, 80, 240, 456, 517, 551
SfaNI GCATC 4 cut(s) 298, 408, 469, 509
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 2 cut(s) 209, 256
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 20, 314
SmoI CTYRAG 2 cut(s) 20, 314
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 5 cut(s) 168, 241, 260, 495, 533
SsiI CCGC 3 cut(s) 199, 383, 706
SspMI CTAG 3 cut(s) 249, 293, 543
StyD4I CCNGG 3 cut(s) 172, 220, 557
TaaI ACNGT 2 cut(s) 449, 523
TaiI ACGT 1 cut(s) 80
TaqI TCGA 5 cut(s) 85, 414, 461, 625, 720
TaqII GACCGA 1 cut(s) 197
TasI AATT 5 cut(s) 168, 241, 260, 495, 533
TatI WGTACW 1 cut(s) 467
TauI GCSGC 2 cut(s) 386, 708
TfiI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 3 cut(s) 18, 409, 433
TseFI GTSAC 2 cut(s) 73, 449
Tsp45I GTSAC 2 cut(s) 73, 449
TspDTI ATGAA 3 cut(s) 253, 526, 695
TspRI CASTG 3 cut(s) 18, 409, 433
VneI GTGCAC 2 cut(s) 121, 577
VpaK11BI GGWCC 2 cut(s) 209, 256
XapI RAATTY 3 cut(s) 168, 241, 533
XceI RCATGY 2 cut(s) 65, 696
XspI CTAG 3 cut(s) 249, 293, 543
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.