Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005784.1

Orthogroup ID

OG0012904

Physical Location & Seq

Genomic Coordinates Reverse (-)

36218 .. 36556

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005784.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgcccttctacatgactactgaagttggtcaaagcggcggtcttgattcgagtactgacttggatgctttgttagcgagaatttcatctactgctgaaagttcaactgttctagacaaattcatggctaatagctttgtggctgagaaggattcggataagtgcactctttgtatggaaaactttgatgggactagtactctcattcgatccccatgctctcatgccttccacaaatcatctgttgttcgatggttggttatgcacaagaacacatgtcccttgtgccgtagtcaactcctcaattgtctccatccaaccaccatatctctttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

6.02

Isoelectric Point (pI)

75.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00305
rosa_chinensis	RchiOBHm_Chr7g0218811 RchiOBHm_Chr7g0223101
rosa_laevigata	RLG00000002002
rosa_multiflora	Rmu_sc0001301.1_g000011 Rmu_sc0005784.1_g000006 Rmu_sc0006514.1_g000033 Rmu_sc0022837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236340
rosa_rugosa	Rorug07G0212900
rosa_samantha	Rh7AG358000 Rh7AG358100 Rh7BG312100 Rh7BG346200 Rh7CG376100 Rh7CG376300 Rh7DG353500
rosa_wichuraiana	Rw7G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 39
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	81, 119
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	55, 199
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	194
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	81, 119
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
BaeGI	GKGCMC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	3 cut(s)	182, 246, 321
BceAI	ACGGC	1 cut(s)	273
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	1 cut(s)	314
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	113, 195
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
BmcAI	AGTACT	2 cut(s)	55, 199
BmsI	GCATC	1 cut(s)	55
BseGI	GGATG	2 cut(s)	70, 313
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	205, 264
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	2 cut(s)	205, 264
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	36, 39
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	204
BssMI	GATC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	70, 313
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	70, 313
Csp6I	GTAC	2 cut(s)	54, 198
CviAII	CATG	5 cut(s)	13, 124, 216, 224, 276
CviJI	RGCY	3 cut(s)	128, 135, 143
CviKI_1	RGCY	3 cut(s)	128, 135, 143
CviQI	GTAC	2 cut(s)	54, 198
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	5 cut(s)	16, 127, 219, 227, 279
FaiI	YATR	8 cut(s)	14, 125, 176, 217, 225, 263, 277, 326
FaqI	GGGAC	2 cut(s)	205, 264
FatI	CATG	5 cut(s)	12, 123, 215, 223, 275
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	2 cut(s)	77, 300
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	113, 195
GluI	GCNGC	1 cut(s)	37
Hin1II	CATG	5 cut(s)	16, 127, 219, 227, 279
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	47, 152
Hpy166II	GTNNAC	2 cut(s)	165, 296
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	44, 113
Hpy8I	GTNNAC	2 cut(s)	165, 296
HpyAV	CCTTC	3 cut(s)	16, 142, 238
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	165, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	16, 127, 219, 227, 279
Kzo9I	GATC	1 cut(s)	209
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	113, 195
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	81, 119, 304
MnlI	CCTC	1 cut(s)	311
MunI	CAATTG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	5 cut(s)	16, 127, 219, 227, 279
NspI	RCATGY	1 cut(s)	279
PciI	ACATGT	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	47, 152
PkrI	GCNGC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	275
RsaI	GTAC	2 cut(s)	55, 199
RsaNI	GTAC	2 cut(s)	54, 198
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	209
ScaI	AGTACT	2 cut(s)	55, 199
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	3 cut(s)	81, 119, 304
SsiI	CCGC	2 cut(s)	36, 39
SspMI	CTAG	2 cut(s)	113, 195
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	50, 208, 250
TasI	AATT	3 cut(s)	81, 119, 304
TatI	WGTACW	2 cut(s)	53, 197
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	47, 152
TspDTI	ATGAA	2 cut(s)	75, 112
VneI	GTGCAC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	81, 119
XbaI	TCTAGA	1 cut(s)	112
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	2 cut(s)	113, 195
ZrmI	AGTACT	2 cut(s)	55, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.