RLG00000002002

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012904
Physical Location & Seq
Reverse (-)
24154057 .. 24154818
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002002

Sequence Viewer

Length: 762 bp
ATGGCCCTCTCAGTGAAGGTTGAGAGTTCTTCTTTCTGTTTGGTACCCTCAGATTCAAAGCATGTGATCAAAGTCATGTTAAATAAAATCCCAGAAAACCCACTATTCCCAGAAGCTCTGTGCACACTCATGGTCTGTCAAAAGAAGTTTCACCAAAAAAGACTCCAAATTCCGGGGCTTACTGCTATTCTTCAACACCGCAAAATCGGTCCACACAATCCTGGGCTCCTTGATCACCTGAATTTCACTAGTCTGGACCAATTCATTGATCTCCCTCAACTTCGTGCACATCTAGGCACTCTCGCATCTTCCCTTAAACCTGAGATTCTGACTCTGTATGAGGATCTGGCCCCCCAGATTTCGGCTCTTGCGACTCGTCCTCCTCACTCGGCGGCAATGCCCTTCTGCATCAGTGCTGAAATCGACATCTTCTTCACTGATTATGTTGGTCAAAGCGGTGGCCTTGATTCGAGTAGTACTGACTTGGATGCTTTATTTGAGAGAATTTCATCTACTGCTGAAGGTTCAATTGTTCTGGACAAATTCATGGCTAATAGCTTTGTGGCTGAAAAGGATTCGGATAAGTGCACTATTTGTATGGAGGACTTTGATGGGACTAGTACTCTCATTCGAACCCCGTGCGCTCATGCCTTTCACAAATCATGTGTTGTTCGATGGTTGATCATGAACAAGAACACATGTCCATTGTGCTGCAGTAAACTCCTCGATTGTCTCCATCCAACCACCATATCTCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

254

Amino Acids

27.87

Weight (kDa)

6.18

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 194 - 237 3.2e-12 Ring finger domain
zf-rbx1 PF12678 194 - 237 2.4e-07 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 195 - 237 5.3e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 196 - 223 1.7e-08 RING-like zinc finger
zf-C3HC4 PF00097 196 - 237 6.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 196 - 235 2.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 3 cut(s) 199, 392, 456
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 4 cut(s) 168, 241, 504, 542
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 3 cut(s) 45, 478, 622
AfiI CCNNNNNNNGG 2 cut(s) 172, 361
AflIII ACRYGT 1 cut(s) 698
AgsI TTSAA 3 cut(s) 57, 194, 528
AhlI ACTAGT 2 cut(s) 248, 617
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 116, 558
AluI AGCT 2 cut(s) 116, 558
Alw21I GWGCWC 3 cut(s) 125, 289, 590
Alw26I GTCTC 1 cut(s) 737
Alw44I GTGCAC 3 cut(s) 121, 285, 586
AlwI GGATC 1 cut(s) 351
AoxI GGCC 3 cut(s) 3, 348, 460
ApaLI GTGCAC 3 cut(s) 121, 285, 586
ApeKI GCWGC 1 cut(s) 711
ApoI RAATTY 4 cut(s) 168, 241, 504, 542
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 4 cut(s) 4, 209, 256, 349
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 143, 227
AsuII TTCGAA 1 cut(s) 631
AvaII GGWCC 2 cut(s) 209, 256
BaeGI GKGCMC 3 cut(s) 125, 289, 590
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 3 cut(s) 125, 289, 590
BbvI GCAGC 1 cut(s) 698
BccI CCATC 3 cut(s) 605, 669, 744
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 3 cut(s) 66, 232, 681
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 2 cut(s) 248, 617
BfaI CTAG 3 cut(s) 249, 293, 618
BfmI CTRYAG 1 cut(s) 712
BisI GCNGC 2 cut(s) 393, 712
BlsI GCNGC 2 cut(s) 394, 713
BmcAI AGTACT 2 cut(s) 478, 622
Bme1390I CCNGG 2 cut(s) 174, 222
Bme18I GGWCC 2 cut(s) 209, 256
BmgT120I GGNCC 4 cut(s) 4, 209, 256, 349
BmiI GGNNCC 3 cut(s) 45, 227, 351
BmrFI CCNGG 2 cut(s) 174, 222
BmsI GCATC 3 cut(s) 314, 417, 478
Bpu14I TTCGAA 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 173, 221
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 361
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 173, 221
BseGI GGATG 2 cut(s) 493, 736
BseLI CCNNNNNNNGG 2 cut(s) 172, 361
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 24, 63, 312
BseRI GAGGAG 2 cut(s) 372, 713
BseSI GKGCMC 3 cut(s) 125, 289, 590
BseXI GCAGC 1 cut(s) 698
BshFI GGCC 3 cut(s) 5, 350, 462
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 3 cut(s) 125, 289, 590
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 172, 361
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 3 cut(s) 5, 350, 462
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 4 cut(s) 125, 228, 289, 590
Bsp143I GATC 5 cut(s) 66, 232, 268, 343, 681
BspACI CCGC 3 cut(s) 199, 392, 456
BspANI GGCC 3 cut(s) 5, 350, 462
BspCNI CTCAG 3 cut(s) 23, 62, 313
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 45, 227, 351
BspMAI CTGCAG 1 cut(s) 716
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 173, 221
BssMI GATC 5 cut(s) 66, 232, 268, 343, 681
Bst2UI CCWGG 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 10, 49, 321
BstF5I GGATG 2 cut(s) 493, 736
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 5 cut(s) 69, 235, 271, 346, 684
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 5 cut(s) 66, 232, 268, 343, 681
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 65, 702
BstSCI CCNGG 2 cut(s) 172, 220
BstSFI CTRYAG 1 cut(s) 712
BstSLI GKGCMC 3 cut(s) 125, 289, 590
BstV1I GCAGC 1 cut(s) 698
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 3 cut(s) 5, 350, 462
BtsCI GGATG 2 cut(s) 493, 736
BtsIMutI CAGTG 3 cut(s) 18, 418, 435
CciI TCATGA 1 cut(s) 684
CfoI GCGC 1 cut(s) 644
Cfr13I GGNCC 4 cut(s) 4, 209, 256, 349
Csp6I GTAC 3 cut(s) 44, 477, 621
CviAII CATG 8 cut(s) 62, 76, 130, 547, 647, 663, 685, 699
CviQI GTAC 3 cut(s) 44, 477, 621
DdeI CTNAG 3 cut(s) 10, 49, 321
DpnI GATC 5 cut(s) 68, 234, 270, 345, 683
DpnII GATC 5 cut(s) 66, 232, 268, 343, 681
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 209, 256
Eco57I CTGAAG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 8 cut(s) 65, 79, 133, 550, 650, 666, 688, 702
FaqI GGGAC 1 cut(s) 628
FatI CATG 8 cut(s) 61, 75, 129, 546, 646, 662, 684, 698
FbaI TGATCA 3 cut(s) 66, 232, 681
Fnu4HI GCNGC 2 cut(s) 393, 712
FokI GGATG 2 cut(s) 500, 723
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 393, 712
FspBI CTAG 3 cut(s) 249, 293, 618
GlaI GCGC 1 cut(s) 643
GluI GCNGC 2 cut(s) 393, 712
HaeIII GGCC 3 cut(s) 5, 350, 462
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 644
Hin1II CATG 8 cut(s) 65, 79, 133, 550, 650, 666, 688, 702
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HinfI GANTC 7 cut(s) 53, 162, 325, 331, 373, 467, 575
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 143, 227
Hpy166II GTNNAC 5 cut(s) 123, 212, 287, 588, 719
Hpy188I TCNGA 3 cut(s) 52, 330, 580
Hpy188III TCNNGA 3 cut(s) 254, 536, 685
Hpy8I GTNNAC 5 cut(s) 123, 212, 287, 588, 719
HpyAV CCTTC 3 cut(s) 10, 412, 515
HpyCH4V TGCA 5 cut(s) 123, 287, 408, 588, 714
HpyF3I CTNAG 3 cut(s) 10, 49, 321
Hsp92II CATG 8 cut(s) 65, 79, 133, 550, 650, 666, 688, 702
HspAI GCGC 1 cut(s) 642
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 3 cut(s) 66, 232, 681
Kzo9I GATC 5 cut(s) 66, 232, 268, 343, 681
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 3 cut(s) 314, 417, 478
MaeI CTAG 3 cut(s) 249, 293, 618
MalI GATC 5 cut(s) 68, 234, 270, 345, 683
MboI GATC 5 cut(s) 66, 232, 268, 343, 681
MboII GAAGA 5 cut(s) 21, 182, 300, 421, 424
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 4 cut(s) 125, 228, 289, 590
MluCI AATT 6 cut(s) 168, 241, 260, 504, 528, 542
MlyI GAGTC 3 cut(s) 156, 325, 367
MnlI CCTC 8 cut(s) 17, 58, 285, 334, 390, 393, 595, 734
MseI TTAA 2 cut(s) 80, 315
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 174, 222
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 222
NciI CCSGG 1 cut(s) 174
NdeII GATC 5 cut(s) 66, 232, 268, 343, 681
NlaIII CATG 8 cut(s) 65, 79, 133, 550, 650, 666, 688, 702
NlaIV GGNNCC 3 cut(s) 45, 227, 351
NmeAIII GCCGAG 1 cut(s) 368
NspI RCATGY 2 cut(s) 65, 702
NspV TTCGAA 1 cut(s) 631
PagI TCATGA 1 cut(s) 684
PciI ACATGT 1 cut(s) 698
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 4 cut(s) 53, 325, 467, 575
PkrI GCNGC 2 cut(s) 394, 713
PleI GAGTC 3 cut(s) 156, 325, 367
PpsI GAGTC 3 cut(s) 156, 325, 367
PscI ACATGT 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 45, 227, 351
PspPI GGNCC 4 cut(s) 4, 209, 256, 349
PstI CTGCAG 1 cut(s) 716
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 3 cut(s) 45, 478, 622
RsaNI GTAC 3 cut(s) 44, 477, 621
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 80, 315
SatI GCNGC 2 cut(s) 393, 712
Sau3AI GATC 5 cut(s) 66, 232, 268, 343, 681
Sau96I GGNCC 4 cut(s) 4, 209, 256, 349
ScaI AGTACT 2 cut(s) 478, 622
SchI GAGTC 3 cut(s) 156, 325, 367
ScrFI CCNGG 2 cut(s) 174, 222
SduI GDGCHC 4 cut(s) 125, 228, 289, 590
SetI ASST 6 cut(s) 21, 118, 240, 322, 526, 560
SfaNI GCATC 3 cut(s) 314, 417, 478
SfcI CTRYAG 1 cut(s) 712
SfuI TTCGAA 1 cut(s) 631
SinI GGWCC 2 cut(s) 209, 256
SmiMI CAYNNNNRTG 1 cut(s) 128
SpeI ACTAGT 2 cut(s) 248, 617
Sse9I AATT 6 cut(s) 168, 241, 260, 504, 528, 542
SsiI CCGC 3 cut(s) 199, 392, 456
SspMI CTAG 3 cut(s) 249, 293, 618
StyD4I CCNGG 2 cut(s) 172, 220
TaqI TCGA 5 cut(s) 423, 470, 631, 673, 726
TaqII GACCGA 1 cut(s) 197
TasI AATT 6 cut(s) 168, 241, 260, 504, 528, 542
TatI WGTACW 2 cut(s) 476, 620
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 4 cut(s) 53, 325, 467, 575
Tru1I TTAA 2 cut(s) 80, 315
Tru9I TTAA 2 cut(s) 80, 315
TscAI CASTG 3 cut(s) 18, 418, 442
TseI GCWGC 1 cut(s) 711
TspDTI ATGAA 4 cut(s) 253, 498, 535, 701
TspRI CASTG 3 cut(s) 18, 418, 442
VneI GTGCAC 3 cut(s) 121, 285, 586
VpaK11BI GGWCC 2 cut(s) 209, 256
XapI RAATTY 4 cut(s) 168, 241, 504, 542
XceI RCATGY 2 cut(s) 65, 702
XspI CTAG 3 cut(s) 249, 293, 618
ZrmI AGTACT 2 cut(s) 478, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.