Rh7AG358100

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012904
Physical Location & Seq
Forward (+)
45920012 .. 45922191
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG358100.1

Sequence Viewer

Length: 753 bp
ATGGCCCTCCCAGTGAAGCTTGAGAGTTCTTCTTTCTCTTTGGTACCCTCAGATTCAAAGCATGTGATCAGAGTCATGTTAAATCGAATCCCAGAAAACCCACTATTCCCAGATTCTCTGTGCACGCTCATGGTCTGCCAGAAGAAGTTTCACCAGAAAAGACTCCAAATTCCGGGGCTTACTGCTATTCTTCAACACCGCAAAATCGGTCCACACAATCCTGGGCTCCTTGATCACCTGAATTTCACTAGTCTGGACCAATTCATTGATCTCCCTCAACTTCGTGCGCATCTAGGCACTCTCGCATCTTCCCTCAAGCCCGAGATTCCGACTCTGTATGAGGATCTGGCCCCCCAGATTTCGGCTCTTGCGACTCGTTCGGCGGCAATGCCCTTCTGCATCAGTGCTGAAATCGACATCTTCTTCACTGATTATGTTGGTCAAAGCGGTGACCTTGATTCGAGTAGTACTGACTTGGATGCTCTGTTTGAGAGAATTGCATCTACTGCTGAAGGTTCAACTGTTCTTGACAAATTCATGGCTAATAGCTTTGTGGCCGAGACGGATTCGGATAAGTGCACTATTTGTATGGAGGAGTTTGATGGGACTTCTACTCTCATTCGAACCCCGTGCGCTCATGCCTTTCACAAATCATGCGTTGTTCGGTGGTTGATCATGAACAAGAACACATGTCCCTTGTGCCGCAGTCAACTCCTCGATTGTCTCCATCCAACCACCATATCTCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

250

Amino Acids

27.65

Weight (kDa)

5.81

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 190 - 238 9.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 191 - 235 3.1e-14 Ring finger domain
zf-rbx1 PF12678 191 - 235 2e-08 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 192 - 234 1.8e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 192 - 235 4.1e-07 zinc-RING finger domain
zf-RING_11 PF17123 193 - 220 1.3e-08 RING-like zinc finger
zf-C3HC4 PF00097 193 - 234 3.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 193 - 232 6.2e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 4 cut(s) 199, 383, 447, 703
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 3 cut(s) 168, 241, 533
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 2 cut(s) 45, 469
AfiI CCNNNNNNNGG 2 cut(s) 172, 361
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 3 cut(s) 57, 194, 519
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 19, 549
AluI AGCT 2 cut(s) 19, 549
Alw21I GWGCWC 2 cut(s) 125, 581
Alw26I GTCTC 2 cut(s) 554, 728
Alw44I GTGCAC 2 cut(s) 121, 577
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 3, 348, 555
ApaLI GTGCAC 2 cut(s) 121, 577
ApoI RAATTY 3 cut(s) 168, 241, 533
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 289, 635
AspS9I GGNCC 4 cut(s) 4, 209, 256, 349
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 143, 227, 461
AsuII TTCGAA 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 209, 256
BaeGI GKGCMC 2 cut(s) 125, 581
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 125, 581
BccI CCATC 2 cut(s) 596, 735
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 3 cut(s) 66, 232, 672
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 554, 728
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 293
BisI GCNGC 2 cut(s) 384, 703
BlsI GCNGC 2 cut(s) 385, 704
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 174, 222
Bme18I GGWCC 2 cut(s) 209, 256
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 4, 209, 256, 349
BmiI GGNNCC 3 cut(s) 45, 227, 351
BmrFI CCNGG 2 cut(s) 174, 222
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 5 cut(s) 298, 314, 408, 469, 509
BmuI ACTGGG 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 41, 299
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 173, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 361
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 173, 221
BseGI GGATG 2 cut(s) 484, 727
BseLI CCNNNNNNNGG 2 cut(s) 172, 361
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 2 cut(s) 608, 704
BseSI GKGCMC 2 cut(s) 125, 581
BshFI GGCC 3 cut(s) 5, 350, 557
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 125, 581
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 619, 678
BslI CCNNNNNNNGG 2 cut(s) 172, 361
BsmAI GTCTC 2 cut(s) 554, 728
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 619, 678
BsnI GGCC 3 cut(s) 5, 350, 557
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 622
Bsp1286I GDGCHC 3 cut(s) 125, 228, 581
Bsp143I GATC 5 cut(s) 66, 232, 268, 343, 672
BspACI CCGC 4 cut(s) 199, 383, 447, 703
BspANI GGCC 3 cut(s) 5, 350, 557
BspCNI CTCAG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 45, 227, 351
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 173, 221
BssMI GATC 5 cut(s) 66, 232, 268, 343, 672
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 523
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 622
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 49
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 2 cut(s) 484, 727
BstHHI GCGC 2 cut(s) 289, 635
BstKTI GATC 5 cut(s) 69, 235, 271, 346, 675
BstMAI GTCTC 2 cut(s) 554, 728
BstMBI GATC 5 cut(s) 66, 232, 268, 343, 672
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 65, 693
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 172, 220
BstSLI GKGCMC 2 cut(s) 125, 581
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 3 cut(s) 5, 350, 557
BtsCI GGATG 2 cut(s) 484, 727
BtsIMutI CAGTG 3 cut(s) 18, 409, 426
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 675
CfoI GCGC 2 cut(s) 289, 635
Cfr13I GGNCC 4 cut(s) 4, 209, 256, 349
Csp6I GTAC 2 cut(s) 44, 468
CviAII CATG 8 cut(s) 62, 76, 130, 538, 638, 654, 676, 690
CviQI GTAC 2 cut(s) 44, 468
DdeI CTNAG 1 cut(s) 49
DpnI GATC 5 cut(s) 68, 234, 270, 345, 674
DpnII GATC 5 cut(s) 66, 232, 268, 343, 672
EaeI YGGCCR 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 209, 256
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 8 cut(s) 65, 79, 133, 541, 641, 657, 679, 693
FaqI GGGAC 2 cut(s) 619, 678
FatI CATG 8 cut(s) 61, 75, 129, 537, 637, 653, 675, 689
FbaI TGATCA 3 cut(s) 66, 232, 672
Fnu4HI GCNGC 2 cut(s) 384, 703
FokI GGATG 2 cut(s) 491, 714
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 384, 703
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 2 cut(s) 249, 293
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 288, 634
GluI GCNGC 2 cut(s) 384, 703
HaeIII GGCC 3 cut(s) 5, 350, 557
HapII CCGG 1 cut(s) 173
HhaI GCGC 2 cut(s) 289, 635
Hin1II CATG 8 cut(s) 65, 79, 133, 541, 641, 657, 679, 693
Hin6I GCGC 2 cut(s) 287, 633
HinP1I GCGC 2 cut(s) 287, 633
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 143, 227, 461
Hpy166II GTNNAC 4 cut(s) 123, 212, 579, 710
Hpy188I TCNGA 4 cut(s) 52, 71, 330, 571
Hpy188III TCNNGA 3 cut(s) 254, 527, 676
Hpy8I GTNNAC 4 cut(s) 123, 212, 579, 710
HpyAV CCTTC 2 cut(s) 403, 506
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 4 cut(s) 123, 399, 500, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 8 cut(s) 65, 79, 133, 541, 641, 657, 679, 693
HspAI GCGC 2 cut(s) 287, 633
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 3 cut(s) 66, 232, 672
Kzo9I GATC 5 cut(s) 66, 232, 268, 343, 672
LmnI GCTCC 1 cut(s) 231
LweI GCATC 5 cut(s) 298, 314, 408, 469, 509
MaeI CTAG 2 cut(s) 249, 293
MaeIII GTNAC 1 cut(s) 449
MalI GATC 5 cut(s) 68, 234, 270, 345, 674
MboI GATC 5 cut(s) 66, 232, 268, 343, 672
MboII GAAGA 6 cut(s) 21, 154, 182, 300, 412, 415
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 3 cut(s) 125, 228, 581
MluCI AATT 5 cut(s) 168, 241, 260, 495, 533
MlyI GAGTC 4 cut(s) 81, 156, 325, 367
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 7 cut(s) 17, 58, 285, 323, 334, 586, 725
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 174, 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 174
NdeII GATC 5 cut(s) 66, 232, 268, 343, 672
NlaIII CATG 8 cut(s) 65, 79, 133, 541, 641, 657, 679, 693
NlaIV GGNNCC 3 cut(s) 45, 227, 351
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 449
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 2 cut(s) 65, 693
NspV TTCGAA 1 cut(s) 622
PagI TCATGA 1 cut(s) 675
PciI ACATGT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
PkrI GCNGC 2 cut(s) 385, 704
PleI GAGTC 4 cut(s) 80, 156, 325, 367
PpsI GAGTC 4 cut(s) 80, 156, 325, 367
PscI ACATGT 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 45, 227, 351
PspPI GGNCC 4 cut(s) 4, 209, 256, 349
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 45, 469
RsaNI GTAC 2 cut(s) 44, 468
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 384, 703
Sau3AI GATC 5 cut(s) 66, 232, 268, 343, 672
Sau96I GGNCC 4 cut(s) 4, 209, 256, 349
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 4 cut(s) 81, 156, 325, 367
ScrFI CCNGG 2 cut(s) 174, 222
SduI GDGCHC 3 cut(s) 125, 228, 581
SetI ASST 5 cut(s) 21, 240, 456, 517, 551
SfaNI GCATC 5 cut(s) 298, 314, 408, 469, 509
SfuI TTCGAA 1 cut(s) 622
SinI GGWCC 2 cut(s) 209, 256
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 20, 314
SmoI CTYRAG 2 cut(s) 20, 314
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 5 cut(s) 168, 241, 260, 495, 533
SsiI CCGC 4 cut(s) 199, 383, 447, 703
SspMI CTAG 2 cut(s) 249, 293
StyD4I CCNGG 2 cut(s) 172, 220
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 5 cut(s) 85, 414, 461, 622, 717
TaqII GACCGA 1 cut(s) 197
TasI AATT 5 cut(s) 168, 241, 260, 495, 533
TatI WGTACW 1 cut(s) 467
TauI GCSGC 2 cut(s) 386, 705
TfiI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 3 cut(s) 18, 409, 433
TseFI GTSAC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 253, 526, 692
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 3 cut(s) 18, 409, 433
VneI GTGCAC 2 cut(s) 121, 577
VpaK11BI GGWCC 2 cut(s) 209, 256
XapI RAATTY 3 cut(s) 168, 241, 533
XceI RCATGY 2 cut(s) 65, 693
XspI CTAG 2 cut(s) 249, 293
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.