Rh7DG353500

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012904
Physical Location & Seq
Forward (+)
47068456 .. 47072256
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG353500.1

Sequence Viewer

Length: 744 bp
ATGGCCCTCCCAGTGAAGCTTGAGAGTTCTTCTTTCTCTTTGGTACCCTCAGATTCAAAGCATGTGATCAGAGTCATGTTAAATCGAATCCCAGAAAACCCACTATTCCCAGATTCTCTGTGCACGCTCATGGTCTGCCAGAAAAAGTTTCACCAGAAAAGACTCCAAATTCCGGGGCTTACTGCTATTCTTCAACACCGCAAAATCGGTCCACACAATCCTGGCCTCCTTGATCACCTGAATTTCACTAGTCTGGACCAATTCATTGATCTCCCTCAACTTCGTGCGCATCTAGGCACTCTCGCATCTTCCCTCAAGCCCGAGATTCCGACTCTGTATGAGGATCTGGCCCCCCAGATTTCGGCTCTTGCGACTCGTTCGGCGGCAATGCCCTTCTGCATCAGTGCTGAAATCGACATCTTCTTCACTGATTATGTTGGCCAAAGCGGTGAACTTGATTCGAGTAGTACTGACTTGGATGCTCTGTTTGCGAGAGTTGCATCTACTGCCGAAGGTTCAACTGTTCTGGACAAATTCATGGCTAATAGCTTTGTGGCCGAGAAGGATTCTGACAAGTGCACTATTTGTATGGAGGAGACTTCTACTCTCATTCGAACCCCGTGCGCTCATGCCTTTCACAAATCATGCGTTGTTCGGTGGTTGATCATGAACAAGAACACATGTCCCTTGTGCCGCAGTCAACTCCTCGATTGTCTCCATCCAACCACCATATCTCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

247

Amino Acids

27.3

Weight (kDa)

6.29

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 190 - 235 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 191 - 232 1.3e-11 Ring finger domain
zf-rbx1 PF12678 191 - 232 1.5e-08 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 192 - 231 1.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 193 - 231 1.7e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 4 cut(s) 199, 383, 447, 694
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 2 cut(s) 439, 555
AcsI RAATTY 3 cut(s) 168, 241, 533
AfaI GTAC 2 cut(s) 45, 469
AfiI CCNNNNNNNGG 2 cut(s) 172, 361
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 3 cut(s) 57, 194, 519
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 19, 549
AluI AGCT 2 cut(s) 19, 549
Alw21I GWGCWC 2 cut(s) 125, 581
Alw26I GTCTC 2 cut(s) 590, 719
Alw44I GTGCAC 2 cut(s) 121, 577
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 5 cut(s) 3, 223, 348, 439, 555
ApaLI GTGCAC 2 cut(s) 121, 577
ApoI RAATTY 3 cut(s) 168, 241, 533
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 289, 626
AspS9I GGNCC 4 cut(s) 4, 209, 256, 349
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 143, 227, 461
AsuII TTCGAA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 209, 256
BaeGI GKGCMC 2 cut(s) 125, 581
BalI TGGCCA 1 cut(s) 441
BanI GGYRCC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 125, 581
BccI CCATC 1 cut(s) 726
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 3 cut(s) 66, 232, 663
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 590, 719
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 293
BisI GCNGC 2 cut(s) 384, 694
BlsI GCNGC 2 cut(s) 385, 695
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 174, 222
Bme18I GGWCC 2 cut(s) 209, 256
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 4, 209, 256, 349
BmiI GGNNCC 2 cut(s) 45, 351
BmrFI CCNGG 2 cut(s) 174, 222
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 5 cut(s) 298, 314, 408, 469, 509
BmuI ACTGGG 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 613
BpuEI CTTGAG 2 cut(s) 41, 299
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 361
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 484, 718
BseLI CCNNNNNNNGG 2 cut(s) 172, 361
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 2 cut(s) 608, 695
BseSI GKGCMC 2 cut(s) 125, 581
BshFI GGCC 5 cut(s) 5, 225, 350, 441, 557
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 125, 581
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 172, 361
BsmAI GTCTC 2 cut(s) 590, 719
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 5 cut(s) 5, 225, 350, 441, 557
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 125, 581
Bsp143I GATC 5 cut(s) 66, 232, 268, 343, 663
BspACI CCGC 4 cut(s) 199, 383, 447, 694
BspANI GGCC 5 cut(s) 5, 225, 350, 441, 557
BspCNI CTCAG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 2 cut(s) 45, 351
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 613
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 5 cut(s) 66, 232, 268, 343, 663
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 523
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 484, 718
BstHHI GCGC 2 cut(s) 289, 626
BstKTI GATC 5 cut(s) 69, 235, 271, 346, 666
BstMAI GTCTC 2 cut(s) 590, 719
BstMBI GATC 5 cut(s) 66, 232, 268, 343, 663
BstMWI GCNNNNNNNGC 3 cut(s) 488, 497, 506
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 65, 684
BstSCI CCNGG 2 cut(s) 172, 220
BstSLI GKGCMC 2 cut(s) 125, 581
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 5 cut(s) 5, 225, 350, 441, 557
BtsCI GGATG 2 cut(s) 484, 718
BtsIMutI CAGTG 3 cut(s) 18, 409, 426
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 666
CfoI GCGC 2 cut(s) 289, 626
Cfr13I GGNCC 4 cut(s) 4, 209, 256, 349
Csp6I GTAC 2 cut(s) 44, 468
CviAII CATG 8 cut(s) 62, 76, 130, 538, 629, 645, 667, 681
CviQI GTAC 2 cut(s) 44, 468
DdeI CTNAG 1 cut(s) 49
DpnI GATC 5 cut(s) 68, 234, 270, 345, 665
DpnII GATC 5 cut(s) 66, 232, 268, 343, 663
EaeI YGGCCR 2 cut(s) 439, 555
Eco47I GGWCC 2 cut(s) 209, 256
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 8 cut(s) 65, 79, 133, 541, 632, 648, 670, 684
FaqI GGGAC 1 cut(s) 669
FatI CATG 8 cut(s) 61, 75, 129, 537, 628, 644, 666, 680
FbaI TGATCA 3 cut(s) 66, 232, 663
Fnu4HI GCNGC 2 cut(s) 384, 694
FokI GGATG 2 cut(s) 491, 705
Fsp4HI GCNGC 2 cut(s) 384, 694
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 2 cut(s) 249, 293
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 288, 625
GluI GCNGC 2 cut(s) 384, 694
HaeIII GGCC 5 cut(s) 5, 225, 350, 441, 557
HapII CCGG 1 cut(s) 173
HhaI GCGC 2 cut(s) 289, 626
Hin1II CATG 8 cut(s) 65, 79, 133, 541, 632, 648, 670, 684
Hin6I GCGC 2 cut(s) 287, 624
HinP1I GCGC 2 cut(s) 287, 624
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 143, 227, 461
Hpy166II GTNNAC 5 cut(s) 123, 212, 452, 579, 701
Hpy188I TCNGA 4 cut(s) 52, 71, 330, 571
Hpy188III TCNNGA 3 cut(s) 254, 527, 667
Hpy8I GTNNAC 5 cut(s) 123, 212, 452, 579, 701
HpyAV CCTTC 3 cut(s) 403, 506, 556
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 4 cut(s) 123, 399, 500, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 497, 506
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 8 cut(s) 65, 79, 133, 541, 632, 648, 670, 684
HspAI GCGC 2 cut(s) 287, 624
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 3 cut(s) 66, 232, 663
Kzo9I GATC 5 cut(s) 66, 232, 268, 343, 663
LweI GCATC 5 cut(s) 298, 314, 408, 469, 509
MaeI CTAG 2 cut(s) 249, 293
MalI GATC 5 cut(s) 68, 234, 270, 345, 665
MboI GATC 5 cut(s) 66, 232, 268, 343, 663
MboII GAAGA 5 cut(s) 21, 182, 300, 412, 415
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 125, 581
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 168, 241, 260, 533
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 4 cut(s) 81, 156, 325, 367
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 8 cut(s) 17, 58, 236, 285, 323, 334, 586, 716
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 174, 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 488, 497, 506
NciI CCSGG 1 cut(s) 174
NdeII GATC 5 cut(s) 66, 232, 268, 343, 663
NlaIII CATG 8 cut(s) 65, 79, 133, 541, 632, 648, 670, 684
NlaIV GGNNCC 2 cut(s) 45, 351
NmeAIII GCCGAG 1 cut(s) 583
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 2 cut(s) 65, 684
NspV TTCGAA 1 cut(s) 613
PagI TCATGA 1 cut(s) 666
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
PkrI GCNGC 2 cut(s) 385, 695
PleI GAGTC 4 cut(s) 80, 156, 325, 367
PpsI GAGTC 4 cut(s) 80, 156, 325, 367
PscI ACATGT 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 45, 351
PspPI GGNCC 4 cut(s) 4, 209, 256, 349
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 45, 469
RsaNI GTAC 2 cut(s) 44, 468
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 384, 694
Sau3AI GATC 5 cut(s) 66, 232, 268, 343, 663
Sau96I GGNCC 4 cut(s) 4, 209, 256, 349
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 4 cut(s) 81, 156, 325, 367
ScrFI CCNGG 2 cut(s) 174, 222
SduI GDGCHC 2 cut(s) 125, 581
SetI ASST 4 cut(s) 21, 240, 517, 551
SfaNI GCATC 5 cut(s) 298, 314, 408, 469, 509
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 2 cut(s) 209, 256
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 20, 314
SmoI CTYRAG 2 cut(s) 20, 314
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 168, 241, 260, 533
SsiI CCGC 4 cut(s) 199, 383, 447, 694
SspMI CTAG 2 cut(s) 249, 293
StyD4I CCNGG 2 cut(s) 172, 220
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 5 cut(s) 85, 414, 461, 613, 708
TaqII GACCGA 1 cut(s) 197
TasI AATT 4 cut(s) 168, 241, 260, 533
TatI WGTACW 1 cut(s) 467
TauI GCSGC 2 cut(s) 386, 696
TfiI GAWTC 6 cut(s) 53, 87, 113, 325, 458, 566
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 3 cut(s) 18, 409, 433
TspDTI ATGAA 3 cut(s) 253, 526, 683
TspRI CASTG 3 cut(s) 18, 409, 433
VneI GTGCAC 2 cut(s) 121, 577
VpaK11BI GGWCC 2 cut(s) 209, 256
XapI RAATTY 3 cut(s) 168, 241, 533
XceI RCATGY 2 cut(s) 65, 684
XspI CTAG 2 cut(s) 249, 293
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.