Rmu_sc0001301.1_g000011

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
OG0012904
Physical Location & Seq
Reverse (-)
37187 .. 37525
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001301.1_g000011.1.cds

Sequence Viewer

Length: 339 bp
atgcccttctgcatcactgctgaagttggtcaaagcggcggtcttgatttgagtactgacttggatgctttgtttgcgagaatttcatctattgctgaaagttcaactgttctagacaaattcatggctaatagctttgtggccgagaaggattcggataagtgcactctttgtatggaagactttgatgggactagtactctcattcgaacctcgtgctctcatgccttccacaaatcatgtgttgttcgatggttggttatgcacaagaacacatgtcccttgtgccgcagtcaactcctcgattgtctccatccaaccaccatatctctttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

5.38

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 39, 289
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 81, 119
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 55, 199
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 1 cut(s) 105
AhlI ACTAGT 1 cut(s) 194
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 2 cut(s) 167, 221
Alw26I GTCTC 1 cut(s) 314
Alw44I GTGCAC 1 cut(s) 163
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 81, 119
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AsuII TTCGAA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 167
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 167, 221
BccI CCATC 3 cut(s) 182, 246, 321
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 2 cut(s) 113, 195
BisI GCNGC 2 cut(s) 37, 289
BlsI GCNGC 2 cut(s) 38, 290
BmcAI AGTACT 2 cut(s) 55, 199
BmsI GCATC 2 cut(s) 21, 55
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 208
BseGI GGATG 2 cut(s) 70, 313
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 167
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 167, 221
BslFI GGGAC 2 cut(s) 205, 264
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 205, 264
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 167, 221
BspACI CCGC 3 cut(s) 36, 39, 289
BspANI GGCC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 208
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 208
BstF5I GGATG 2 cut(s) 70, 313
BstMAI GTCTC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 70, 313
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Csp6I GTAC 2 cut(s) 54, 198
CviAII CATG 4 cut(s) 124, 224, 240, 276
CviJI RGCY 3 cut(s) 128, 135, 143
CviKI_1 RGCY 3 cut(s) 128, 135, 143
CviQI GTAC 2 cut(s) 54, 198
EaeI YGGCCR 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 4 cut(s) 127, 227, 243, 279
FaiI YATR 7 cut(s) 125, 176, 225, 241, 263, 277, 326
FaqI GGGAC 2 cut(s) 205, 264
FatI CATG 4 cut(s) 123, 223, 239, 275
Fnu4HI GCNGC 2 cut(s) 37, 289
FokI GGATG 2 cut(s) 77, 300
Fsp4HI GCNGC 2 cut(s) 37, 289
FspBI CTAG 2 cut(s) 113, 195
GluI GCNGC 2 cut(s) 37, 289
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 4 cut(s) 127, 227, 243, 279
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 165, 296
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 44, 113
Hpy8I GTNNAC 2 cut(s) 165, 296
HpyAV CCTTC 3 cut(s) 16, 142, 238
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 12, 165, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 4 cut(s) 127, 227, 243, 279
LweI GCATC 2 cut(s) 21, 55
MaeI CTAG 2 cut(s) 113, 195
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 167, 221
MluCI AATT 2 cut(s) 81, 119
MnlI CCTC 2 cut(s) 223, 311
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 127, 227, 243, 279
NmeAIII GCCGAG 1 cut(s) 169
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 208
PciI ACATGT 1 cut(s) 275
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 38, 290
PscI ACATGT 1 cut(s) 275
RsaI GTAC 2 cut(s) 55, 199
RsaNI GTAC 2 cut(s) 54, 198
SatI GCNGC 2 cut(s) 37, 289
ScaI AGTACT 2 cut(s) 55, 199
SduI GDGCHC 2 cut(s) 167, 221
SetI ASST 2 cut(s) 137, 215
SfaNI GCATC 2 cut(s) 21, 55
SfuI TTCGAA 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 2 cut(s) 81, 119
SsiI CCGC 3 cut(s) 36, 39, 289
SspMI CTAG 2 cut(s) 113, 195
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 208, 250, 303
TasI AATT 2 cut(s) 81, 119
TatI WGTACW 2 cut(s) 53, 197
TauI GCSGC 2 cut(s) 39, 291
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 75, 112
TspRI CASTG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 163
XapI RAATTY 2 cut(s) 81, 119
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 1 cut(s) 279
XspI CTAG 2 cut(s) 113, 195
ZrmI AGTACT 2 cut(s) 55, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.