RchiOBHm_Chr7g0218811

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012904
Physical Location & Seq
Forward (+)
37039983 .. 37040321
339 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19588

Sequence Viewer

Length: 339 bp
ATGCCCTTCTGCATCACTGCTGAAGTTGGTCAAAGCGGCGGTCTTGATTCCAGTACTGACTTGGATGCTTTGTTTACGAGAATTTCATCTACTGTTGAAGGTTCAACTGTTCTAGACAAATTCATGGCTAATAGCTTTGTGGCCAAGAAGAATTCGGATAAGTGCACTCTTTGTATGGAAGACTTTGATGGGACTAGTACTCTCATTCGAACCCCGTGCTCTCATGCCTTCCACAAATCATGTGTTGTTCGATGGTTGGTTATGGACAAGAACACATGTCCCTTGTGCCGCAGTCAACTCCTCGATTGTCTCCATCCAACCACCATATCTCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.25

Weight (kDa)

5.81

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 52 - 97 3.1e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 53 - 97 3.3e-14 Ring finger domain
zf-C3HC4_2 PF13923 54 - 96 8.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 54 - 97 4.3e-07 zinc-RING finger domain
zf-RING_11 PF17123 55 - 82 2.6e-08 RING-like zinc finger
zf-C3HC4 PF00097 55 - 96 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 55 - 94 2.7e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 39, 289
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 3 cut(s) 81, 119, 151
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 55, 199
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 2 cut(s) 98, 105
AhlI ACTAGT 1 cut(s) 194
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 2 cut(s) 167, 221
Alw26I GTCTC 1 cut(s) 314
Alw44I GTGCAC 1 cut(s) 163
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 163
ApoI RAATTY 3 cut(s) 81, 119, 151
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AsuII TTCGAA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 167, 221
BccI CCATC 3 cut(s) 182, 246, 321
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 2 cut(s) 113, 195
BisI GCNGC 2 cut(s) 37, 289
BlsI GCNGC 2 cut(s) 38, 290
BmcAI AGTACT 2 cut(s) 55, 199
BmsI GCATC 2 cut(s) 21, 55
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 70, 313
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 167
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 167, 221
BslFI GGGAC 2 cut(s) 205, 264
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 205, 264
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 167, 221
BspACI CCGC 3 cut(s) 36, 39, 289
BspANI GGCC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 208
BsrI ACTGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 94, 109
BstBI TTCGAA 1 cut(s) 208
BstF5I GGATG 2 cut(s) 70, 313
BstMAI GTCTC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 70, 313
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Csp6I GTAC 2 cut(s) 54, 198
CviAII CATG 4 cut(s) 124, 224, 240, 276
CviJI RGCY 3 cut(s) 128, 135, 143
CviKI_1 RGCY 3 cut(s) 128, 135, 143
CviQI GTAC 2 cut(s) 54, 198
EaeI YGGCCR 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 151
FaeI CATG 4 cut(s) 127, 227, 243, 279
FaiI YATR 7 cut(s) 125, 176, 225, 241, 263, 277, 326
FaqI GGGAC 2 cut(s) 205, 264
FatI CATG 4 cut(s) 123, 223, 239, 275
Fnu4HI GCNGC 2 cut(s) 37, 289
FokI GGATG 2 cut(s) 77, 300
Fsp4HI GCNGC 2 cut(s) 37, 289
FspBI CTAG 2 cut(s) 113, 195
GluI GCNGC 2 cut(s) 37, 289
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 4 cut(s) 127, 227, 243, 279
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 3 cut(s) 75, 165, 296
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 44, 113
Hpy8I GTNNAC 3 cut(s) 75, 165, 296
HpyAV CCTTC 3 cut(s) 16, 92, 238
HpyCH4III ACNGT 2 cut(s) 94, 109
HpyCH4V TGCA 2 cut(s) 12, 165
Hsp92II CATG 4 cut(s) 127, 227, 243, 279
LpnPI CCDG 1 cut(s) 64
LweI GCATC 2 cut(s) 21, 55
MaeI CTAG 2 cut(s) 113, 195
MboII GAAGA 2 cut(s) 160, 191
MhlI GDGCHC 2 cut(s) 167, 221
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 81, 119, 151
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 1 cut(s) 311
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
NlaIII CATG 4 cut(s) 127, 227, 243, 279
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 208
PciI ACATGT 1 cut(s) 275
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 38, 290
PscI ACATGT 1 cut(s) 275
RsaI GTAC 2 cut(s) 55, 199
RsaNI GTAC 2 cut(s) 54, 198
SatI GCNGC 2 cut(s) 37, 289
ScaI AGTACT 2 cut(s) 55, 199
SduI GDGCHC 2 cut(s) 167, 221
SetI ASST 2 cut(s) 103, 137
SfaNI GCATC 2 cut(s) 21, 55
SfuI TTCGAA 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 3 cut(s) 81, 119, 151
SsiI CCGC 3 cut(s) 36, 39, 289
SspMI CTAG 2 cut(s) 113, 195
TaaI ACNGT 2 cut(s) 94, 109
TaqI TCGA 3 cut(s) 208, 250, 303
TasI AATT 3 cut(s) 81, 119, 151
TatI WGTACW 2 cut(s) 53, 197
TauI GCSGC 2 cut(s) 39, 291
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 75, 112
TspRI CASTG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 163
XapI RAATTY 3 cut(s) 81, 119, 151
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 2 cut(s) 113, 195
ZrmI AGTACT 2 cut(s) 55, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.