Rh7BG346200

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012904
Physical Location & Seq
Forward (+)
36193357 .. 36195780
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG346200.1

Sequence Viewer

Length: 762 bp
ATGGCAGAGAAGCTTGAGAGTTCTTCTTTCTCTTTGGTACCTTCAGATTCAAAGCATGTGGTCAGAGTCATGTTAAATCGAATCCCAGAAAACCCACTATTCCCAGATGCTCTGTGCACGCTCATGGTCTGCCAGAAGAAGTTTCACCAGAAAAGACTCCAAATTCCGGGGCTTACTGCTATTCTTCAACACCGCAAAATCGGTCCACACAATCCTGGGCTCCTTGATCACCTGAATTTCACTAGTCTGGACCAATTCATTGATCTCCCTCAACTTCGTGCGCATCTGGGCACTCTCTCGTCTTCCCTCAAGCCCGAGATTCCGACCCTGTATGAGGATCTGGCCCCCCAGATTTCGGCTCTTGCGACTCGTCCTCCTCATTCGGCGGCAACGGCAATGCCCTTCTGCATCAGTGCTGAAATCGACATCTTCTTCACTGATTATGTTGGTCAAAGCGGTGACCTTGATTCGAGTAGTACTGACTTGGATGCTCTGTTTGAGAGAATTGCTTCTACTGCTGAAGGTGCAAGTGTTCTGGAAAAATTCATGGCTAATGGCTTTGTGGCCGAGAAGGATTCGGATAAGTGCACTATTTGTATGGAGGACTTTGATGGGACTTGTACTCTCATTCGAACCCCGTGCTCTCATGCCTTTCACAAATCATGCGTTGTTCGATGGTTGATTATGAACAAGAACACATGTCCCTTGTGCCGCAGTCAACTACTCGATTGTCTCCACCCAACCACCATATCTCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

253

Amino Acids

27.96

Weight (kDa)

5.9

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 194 - 238 2.2e-13 Ring finger domain
zf-rbx1 PF12678 194 - 238 6.6e-10 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 195 - 237 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 196 - 223 5.2e-08 RING-like zinc finger
zf-C3HC4 PF00097 196 - 237 4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 196 - 235 9.5e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 4 cut(s) 193, 386, 456, 712
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 3 cut(s) 162, 235, 542
AcuI CTGAAG 2 cut(s) 27, 540
AfaI GTAC 3 cut(s) 39, 478, 622
AfiI CCNNNNNNNGG 3 cut(s) 166, 334, 355
AflIII ACRYGT 1 cut(s) 698
AgsI TTSAA 2 cut(s) 51, 188
AhlI ACTAGT 1 cut(s) 242
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 3 cut(s) 119, 590, 644
Alw26I GTCTC 1 cut(s) 737
Alw44I GTGCAC 2 cut(s) 115, 586
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 342, 564
ApaLI GTGCAC 2 cut(s) 115, 586
ApoI RAATTY 3 cut(s) 162, 235, 542
Asp700I GAANNNNTTC 1 cut(s) 508
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 203, 250, 343
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 137, 221, 470
AsuII TTCGAA 1 cut(s) 631
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 2 cut(s) 203, 250
BaeGI GKGCMC 3 cut(s) 119, 293, 590
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 3 cut(s) 119, 590, 644
BccI CCATC 2 cut(s) 605, 669
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 387, 712
BlsI GCNGC 2 cut(s) 388, 713
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 168, 216
Bme18I GGWCC 2 cut(s) 203, 250
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 203, 250, 343
BmiI GGNNCC 3 cut(s) 39, 221, 345
BmrFI CCNGG 2 cut(s) 168, 216
BmsI GCATC 4 cut(s) 97, 292, 417, 478
BpiI GAAGAC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 631
BpuEI CTTGAG 2 cut(s) 35, 293
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 167, 215
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 334, 355
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 167, 215
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 3 cut(s) 166, 334, 355
BseMI GCAATG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 3 cut(s) 119, 293, 590
BshFI GGCC 2 cut(s) 344, 566
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 3 cut(s) 119, 590, 644
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 628, 687
BslI CCNNNNNNNGG 3 cut(s) 166, 334, 355
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 2 cut(s) 628, 687
BsnI GGCC 2 cut(s) 344, 566
BsoBI CYCGRG 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 5 cut(s) 119, 222, 293, 590, 644
Bsp143I GATC 3 cut(s) 226, 262, 337
BspACI CCGC 4 cut(s) 193, 386, 456, 712
BspANI GGCC 2 cut(s) 344, 566
BspLI GGNNCC 3 cut(s) 39, 221, 345
BspPI GGATC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 167, 215
BssMI GATC 3 cut(s) 226, 262, 337
Bst2UI CCWGG 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 458
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 229, 265, 340
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 3 cut(s) 226, 262, 337
BstMWI GCNNNNNNNGC 3 cut(s) 392, 515, 524
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 59, 702
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 166, 214
BstSLI GKGCMC 3 cut(s) 119, 293, 590
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 344, 566
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 418, 435
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 3 cut(s) 203, 250, 343
Csp6I GTAC 3 cut(s) 38, 477, 621
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 7 cut(s) 56, 70, 124, 547, 647, 663, 699
CviJI RGCY 9 cut(s) 13, 172, 220, 313, 344, 359, 551, 558, 566
CviKI_1 RGCY 9 cut(s) 13, 172, 220, 313, 344, 359, 551, 558, 566
CviQI GTAC 3 cut(s) 38, 477, 621
DpnI GATC 3 cut(s) 228, 264, 339
DpnII GATC 3 cut(s) 226, 262, 337
EaeI YGGCCR 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 203, 250
Eco57I CTGAAG 2 cut(s) 27, 540
Eco88I CYCGRG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 7 cut(s) 59, 73, 127, 550, 650, 666, 702
FaqI GGGAC 2 cut(s) 628, 687
FatI CATG 7 cut(s) 55, 69, 123, 546, 646, 662, 698
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 387, 712
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 387, 712
FspAI RTGCGCAY 1 cut(s) 282
FspBI CTAG 1 cut(s) 243
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 387, 712
HaeIII GGCC 2 cut(s) 344, 566
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 283
Hin1II CATG 7 cut(s) 59, 73, 127, 550, 650, 666, 702
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 8 cut(s) 47, 66, 81, 156, 319, 367, 467, 575
HpaII CCGG 1 cut(s) 167
HphI GGTGA 3 cut(s) 137, 221, 470
Hpy166II GTNNAC 4 cut(s) 117, 206, 588, 719
Hpy188I TCNGA 4 cut(s) 46, 65, 324, 580
Hpy188III TCNNGA 2 cut(s) 248, 536
Hpy8I GTNNAC 4 cut(s) 117, 206, 588, 719
HpyAV CCTTC 4 cut(s) 51, 412, 515, 565
HpyCH4V TGCA 4 cut(s) 117, 408, 527, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 515, 524
Hsp92II CATG 7 cut(s) 59, 73, 127, 550, 650, 666, 702
HspAI GCGC 1 cut(s) 281
KpnI GGTACC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 226, 262, 337
LmnI GCTCC 1 cut(s) 225
LweI GCATC 4 cut(s) 97, 292, 417, 478
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 458
MalI GATC 3 cut(s) 228, 264, 339
MboI GATC 3 cut(s) 226, 262, 337
MboII GAAGA 6 cut(s) 15, 148, 176, 294, 421, 424
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 5 cut(s) 119, 222, 293, 590, 644
MluCI AATT 5 cut(s) 162, 235, 254, 504, 542
MlyI GAGTC 3 cut(s) 75, 150, 361
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 6 cut(s) 279, 317, 328, 384, 387, 595
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 168, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 392, 515, 524
NciI CCSGG 1 cut(s) 168
NdeII GATC 3 cut(s) 226, 262, 337
NlaIII CATG 7 cut(s) 59, 73, 127, 550, 650, 666, 702
NlaIV GGNNCC 3 cut(s) 39, 221, 345
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 458
NsbI TGCGCA 1 cut(s) 282
NspI RCATGY 2 cut(s) 59, 702
NspV TTCGAA 1 cut(s) 631
PciI ACATGT 1 cut(s) 698
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 5 cut(s) 47, 81, 319, 467, 575
PkrI GCNGC 2 cut(s) 388, 713
PleI GAGTC 3 cut(s) 74, 150, 361
PpsI GAGTC 3 cut(s) 74, 150, 361
PscI ACATGT 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 39, 221, 345
PspPI GGNCC 3 cut(s) 203, 250, 343
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 3 cut(s) 39, 478, 622
RsaNI GTAC 3 cut(s) 38, 477, 621
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 387, 712
Sau3AI GATC 3 cut(s) 226, 262, 337
Sau96I GGNCC 3 cut(s) 203, 250, 343
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 3 cut(s) 75, 150, 361
ScrFI CCNGG 2 cut(s) 168, 216
SduI GDGCHC 5 cut(s) 119, 222, 293, 590, 644
SetI ASST 5 cut(s) 15, 43, 234, 465, 526
SfaNI GCATC 4 cut(s) 97, 292, 417, 478
SfuI TTCGAA 1 cut(s) 631
SinI GGWCC 2 cut(s) 203, 250
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 14, 308
SmoI CTYRAG 2 cut(s) 14, 308
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 5 cut(s) 162, 235, 254, 504, 542
SsiI CCGC 4 cut(s) 193, 386, 456, 712
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 166, 214
TaqI TCGA 6 cut(s) 79, 423, 470, 631, 673, 726
TaqII GACCGA 1 cut(s) 191
TasI AATT 5 cut(s) 162, 235, 254, 504, 542
TatI WGTACW 2 cut(s) 476, 620
TauI GCSGC 2 cut(s) 389, 714
TfiI GAWTC 5 cut(s) 47, 81, 319, 467, 575
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 418, 442
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 3 cut(s) 247, 535, 701
TspRI CASTG 2 cut(s) 418, 442
VneI GTGCAC 2 cut(s) 115, 586
VpaK11BI GGWCC 2 cut(s) 203, 250
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 3 cut(s) 162, 235, 542
XceI RCATGY 2 cut(s) 59, 702
XmnI GAANNNNTTC 1 cut(s) 508
XspI CTAG 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.