Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022837.1

Orthogroup ID

OG0012904

Physical Location & Seq

Genomic Coordinates Reverse (-)

333 .. 1010

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgttaaatcgaatcccagaaaacccactattcccagattctctgtgcacgctcatggtctgccagaagaagtttcaccagaaaagactccaaattccggggcttactgctattcttcaacaccgcaaaatcggtccacacaatcctgggctccttgatcacctgaatttcactagtctggaccaattcattgatctccctcaacttcgtgcgcatctaggcactctcgcatcttccctcaagcccgagattccgactctgtatgaggatctggccccccagatttcggctcttgcgactcgttctggggcaatgcccttctgcatcagtgctgaaatcgacatcttcttcactgattatgttggtcaaagcggtgaccttgattcgagtagtactgacttggatgctctgtttgcgagagttgcatctactgctgaaggttcaactgttctggacaaattcatggctaacagctttgtggccgagaaggattctgataaatgcactatttgtatggaggactttgacgggacttctactctcattcgaaccccgtgcgctcatgcctttcacaaatcatgcgttgttcggtggttgatcatgaacaagaacacatgccccttgtgccgcagtcaactcctcgattgtctccatccaaccaccatatctctttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

24.87

Weight (kDa)

5.86

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00305
rosa_chinensis	RchiOBHm_Chr7g0218811 RchiOBHm_Chr7g0223101
rosa_laevigata	RLG00000002002
rosa_multiflora	Rmu_sc0001301.1_g000011 Rmu_sc0005784.1_g000006 Rmu_sc0006514.1_g000033 Rmu_sc0022837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236340
rosa_rugosa	Rorug07G0212900
rosa_samantha	Rh7AG358000 Rh7AG358100 Rh7BG312100 Rh7BG346200 Rh7CG376100 Rh7CG376300 Rh7DG353500
rosa_wichuraiana	Rw7G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AciI	CCGC	3 cut(s)	124, 372, 628
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	93, 166, 458
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	97, 286
AgsI	TTSAA	2 cut(s)	119, 444
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	474
AluI	AGCT	1 cut(s)	474
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	653
Alw44I	GTGCAC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	273, 480
ApaLI	GTGCAC	1 cut(s)	46
ApoI	RAATTY	3 cut(s)	93, 166, 458
AspLEI	GCGC	2 cut(s)	214, 560
AspS9I	GGNCC	3 cut(s)	134, 181, 274
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	68, 152, 386
AsuII	TTCGAA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	134, 181
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	1 cut(s)	660
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	2 cut(s)	157, 597
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	653
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	174, 218
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	99, 147
Bme18I	GGWCC	2 cut(s)	134, 181
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	134, 181, 274
BmiI	GGNNCC	2 cut(s)	152, 276
BmrFI	CCNGG	2 cut(s)	99, 147
BmsI	GCATC	5 cut(s)	223, 239, 333, 394, 434
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	98, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 286
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	98, 146
BseGI	GGATG	2 cut(s)	409, 652
BseLI	CCNNNNNNNGG	2 cut(s)	97, 286
BseMI	GCAATG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	275, 482
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	97, 286
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	275, 482
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	50, 153
Bsp143I	GATC	4 cut(s)	157, 193, 268, 597
BspACI	CCGC	3 cut(s)	124, 372, 628
BspANI	GGCC	2 cut(s)	275, 482
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	152, 276
BspPI	GGATC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	98, 146
BssMI	GATC	4 cut(s)	157, 193, 268, 597
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	448
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	50
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	409, 652
BstHHI	GCGC	2 cut(s)	214, 560
BstKTI	GATC	4 cut(s)	160, 196, 271, 600
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	4 cut(s)	157, 193, 268, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 624
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	618
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	97, 145
BstSLI	GKGCMC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	275, 482
BtsCI	GGATG	2 cut(s)	409, 652
BtsIMutI	CAGTG	2 cut(s)	334, 351
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	2 cut(s)	214, 560
Cfr13I	GGNCC	3 cut(s)	134, 181, 274
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	6 cut(s)	55, 463, 563, 579, 601, 615
CviJI	RGCY	8 cut(s)	103, 151, 244, 275, 290, 467, 474, 482
CviKI_1	RGCY	8 cut(s)	103, 151, 244, 275, 290, 467, 474, 482
CviQI	GTAC	1 cut(s)	393
DpnI	GATC	4 cut(s)	159, 195, 270, 599
DpnII	GATC	4 cut(s)	157, 193, 268, 597
EaeI	YGGCCR	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	134, 181
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	6 cut(s)	58, 466, 566, 582, 604, 618
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	54, 462, 562, 578, 600, 614
FbaI	TGATCA	2 cut(s)	157, 597
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	2 cut(s)	416, 639
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	628
FspAI	RTGCGCAY	1 cut(s)	213
FspBI	CTAG	2 cut(s)	174, 218
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	2 cut(s)	213, 559
GluI	GCNGC	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	275, 482
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	214, 560
Hin1II	CATG	6 cut(s)	58, 466, 566, 582, 604, 618
Hin6I	GCGC	2 cut(s)	212, 558
HinP1I	GCGC	2 cut(s)	212, 558
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	8 cut(s)	12, 38, 87, 250, 256, 298, 383, 491
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	68, 152, 386
Hpy166II	GTNNAC	3 cut(s)	48, 137, 635
Hpy188I	TCNGA	2 cut(s)	255, 496
Hpy188III	TCNNGA	3 cut(s)	179, 452, 601
Hpy8I	GTNNAC	3 cut(s)	48, 137, 635
HpyAV	CCTTC	3 cut(s)	328, 431, 481
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	48, 324, 425, 504
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 624
Hsp92II	CATG	6 cut(s)	58, 466, 566, 582, 604, 618
HspAI	GCGC	2 cut(s)	212, 558
Ksp22I	TGATCA	2 cut(s)	157, 597
Kzo9I	GATC	4 cut(s)	157, 193, 268, 597
LmnI	GCTCC	1 cut(s)	156
LweI	GCATC	5 cut(s)	223, 239, 333, 394, 434
MaeI	CTAG	2 cut(s)	174, 218
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	4 cut(s)	159, 195, 270, 599
MboI	GATC	4 cut(s)	157, 193, 268, 597
MboII	GAAGA	5 cut(s)	79, 107, 225, 337, 340
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	50, 153
MluCI	AATT	4 cut(s)	93, 166, 185, 458
MlyI	GAGTC	3 cut(s)	81, 250, 292
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	5 cut(s)	210, 248, 259, 511, 650
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	99, 147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 624
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	4 cut(s)	157, 193, 268, 597
NlaIII	CATG	6 cut(s)	58, 466, 566, 582, 604, 618
NlaIV	GGNNCC	2 cut(s)	152, 276
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	374
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	618
NspV	TTCGAA	1 cut(s)	547
PagI	TCATGA	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	5 cut(s)	12, 38, 250, 383, 491
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	3 cut(s)	81, 250, 292
PpsI	GAGTC	3 cut(s)	81, 250, 292
Psp6I	CCWGG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	152, 276
PspPI	GGNCC	3 cut(s)	134, 181, 274
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	4 cut(s)	157, 193, 268, 597
Sau96I	GGNCC	3 cut(s)	134, 181, 274
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	3 cut(s)	81, 250, 292
ScrFI	CCNGG	2 cut(s)	99, 147
SduI	GDGCHC	2 cut(s)	50, 153
SetI	ASST	4 cut(s)	165, 381, 442, 476
SfaNI	GCATC	5 cut(s)	223, 239, 333, 394, 434
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	2 cut(s)	134, 181
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	4 cut(s)	93, 166, 185, 458
SsiI	CCGC	3 cut(s)	124, 372, 628
SspMI	CTAG	2 cut(s)	174, 218
StyD4I	CCNGG	2 cut(s)	97, 145
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	5 cut(s)	10, 339, 386, 547, 642
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	93, 166, 185, 458
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	5 cut(s)	12, 38, 250, 383, 491
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	334, 358
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	178, 451, 617
TspRI	CASTG	2 cut(s)	334, 358
VneI	GTGCAC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	134, 181
XapI	RAATTY	3 cut(s)	93, 166, 458
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	2 cut(s)	174, 218
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.