RchiOBHm_Chr7g0227751

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015764
Physical Location & Seq
Reverse (-)
50981708 .. 50982244
537 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGTCGTTCCTCAACAAAGCCTTGCTTGCACCAGATAATTTGAAGAAAAAAGGGAAGGTGTGTACCATCGCTGAGGTTGAGGAAGCAAAGGCTGTTCTGAGGCTGTTTCCAATATGGGCTACATGCTTGCCATATTCTATTGTATTTGCACAGTCCACTACTTTCTTCACCAAGCAAGGTGCTACCGTGGATAGAACTATCGTGCCCGGTTTTGACATACCGGCTACTTCACTTCAATCATTTATCTGCCTTGCCATAATAATGATCATACCCATTTATGACCTCATTTTTGTTCCAACAGCAAGAGCTTTCACCAGAGAACCCTCTGGCGTTACAATGCTACAAAGAATCGGAACTGGGATGTTTTTCTCTATCATATCTATGGTCGTTGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

8.91

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 16 - 130 2.6e-27 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 64
AgsI TTSAA 2 cut(s) 43, 236
AluBI AGCT 2 cut(s) 308, 394
AluI AGCT 2 cut(s) 308, 394
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 160, 304
BaeGI GKGCMC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 74
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 63, 89
BseNI ACTGG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 207, 221
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 64, 90
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 153, 187
BstC8I GCNNGC 2 cut(s) 27, 128
BstDEI CTNAG 2 cut(s) 72, 98
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 27, 128
Cfr10I RCCGGY 1 cut(s) 220
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 123
CviJI RGCY 7 cut(s) 20, 92, 103, 119, 224, 308, 394
CviKI_1 RGCY 7 cut(s) 20, 92, 103, 119, 224, 308, 394
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 72, 98
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
FaeI CATG 1 cut(s) 126
FaiI YATR 9 cut(s) 115, 124, 133, 218, 257, 269, 279, 377, 383
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 264
FokI GGATG 1 cut(s) 373
HapII CCGG 2 cut(s) 207, 221
Hin1II CATG 1 cut(s) 126
HinfI GANTC 1 cut(s) 348
HpaII CCGG 2 cut(s) 207, 221
HphI GGTGA 2 cut(s) 160, 304
Hpy166II GTNNAC 2 cut(s) 63, 156
Hpy188I TCNGA 2 cut(s) 99, 353
Hpy8I GTNNAC 2 cut(s) 63, 156
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 153, 187
HpyCH4V TGCA 2 cut(s) 29, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 2 cut(s) 72, 98
Hsp92II CATG 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 45, 220, 234, 312, 328, 342
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 55, 157
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 20, 67, 73, 93, 293, 334
MslI CAYNNNNRTG 2 cut(s) 260, 380
MspI CCGG 2 cut(s) 207, 221
MspR9I CCNGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 207
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 126
NspI RCATGY 1 cut(s) 126
PfeI GAWTC 1 cut(s) 348
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 2 cut(s) 260, 380
Sau3AI GATC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 60, 78, 181, 285, 310, 396
SmiMI CAYNNNNRTG 2 cut(s) 260, 380
Sse9I AATT 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 153, 187
TasI AATT 1 cut(s) 37
TfiI GAWTC 1 cut(s) 348
XceI RCATGY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.