RLG00000001624

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015764
Physical Location & Seq
Forward (+)
18440165 .. 18441687
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001624

Sequence Viewer

Length: 474 bp
ATGGACAAGATCCAGAGGAGTGCAAAGCGAAAAGCTCATTCTTCAATTGGTGAATCCCGTGGAACCTTGCCTGATCAAAGTTCTGAACAATTCAAGTTCCTCAACAAAGCCTTGCTTGCACCAGATGATTTGAAGAAAAACGGGAAGGTGTGTACCATCGCTGAGGTTGAGGAAGCAAAGGCTGTTCTTAGGCTGTTTCCAATATGGGCTACATGCTTGGCATGTGCTATTGTATTTGCACAGTGCACTACTTTCTTCACCAAGCAAGGTGCCACCATGGACAGAACTATTGTCCCCGGTTTTGACATACCAGCTGCTTCACTTCAGTCATTTATCAGCCTTGCCATAGTGATATTCATACCCATTTATGACCGAATTTTTGTTCCAATGGCAAGAGCTTTCACCAGAGAACCCTCTGGCATTACAATGCTACAAAGAATCAGAACTGGGATGTTTTCTCTATCATTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

158

Amino Acids

17.44

Weight (kDa)

9.54

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 15 - 152 1e-26 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 3 cut(s) 45, 94, 133
AluBI AGCT 3 cut(s) 35, 314, 398
AluI AGCT 3 cut(s) 35, 314, 398
Alw21I GWGCWC 1 cut(s) 248
Alw44I GTGCAC 1 cut(s) 244
AlwI GGATC 1 cut(s) 4
ApaLI GTGCAC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 375
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 62, 250, 394
BaeGI GKGCMC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 164
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 64, 271
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 58, 276, 295
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 58, 276, 295
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 9, 73
Bsp19I CCATGG 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 64, 271
BspPI GGATC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 58, 276, 295
BssMI GATC 2 cut(s) 9, 73
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 162, 188
BstDSI CCRYGG 2 cut(s) 58, 276
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 12, 76
BstMBI GATC 2 cut(s) 9, 73
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 216, 225
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BtgI CCRYGG 2 cut(s) 58, 276
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 213, 222, 277
CviJI RGCY 8 cut(s) 35, 110, 182, 193, 209, 314, 339, 398
CviKI_1 RGCY 8 cut(s) 35, 110, 182, 193, 209, 314, 339, 398
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 162, 188
DpnI GATC 2 cut(s) 11, 75
DpnII GATC 2 cut(s) 9, 73
Eco130I CCWWGG 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 216, 225, 280
FaiI YATR 9 cut(s) 205, 214, 223, 278, 308, 347, 359, 369, 472
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 212, 221, 276
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 216, 225, 280
HinfI GANTC 2 cut(s) 53, 438
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 62, 250, 394
Hpy166II GTNNAC 2 cut(s) 153, 246
Hpy188I TCNGA 2 cut(s) 85, 443
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 153, 246
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 23, 119, 239, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 162, 188
Hsp92II CATG 3 cut(s) 216, 225, 280
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 9, 73
LpnPI CCDG 8 cut(s) 26, 84, 135, 310, 324, 402, 418, 432
Lsp1109I GCAGC 1 cut(s) 301
MalI GATC 2 cut(s) 11, 75
MboI GATC 2 cut(s) 9, 73
MboII GAAGA 3 cut(s) 33, 145, 247
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 3 cut(s) 45, 89, 375
MnlI CCTC 5 cut(s) 9, 110, 157, 163, 424
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 9, 73
NlaIII CATG 3 cut(s) 216, 225, 280
NlaIV GGNNCC 2 cut(s) 64, 271
NspI RCATGY 2 cut(s) 216, 225
PfeI GAWTC 2 cut(s) 53, 438
PkrI GCNGC 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 64, 271
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 425
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 9, 73
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 248
SetI ASST 7 cut(s) 37, 68, 150, 168, 271, 316, 400
SfcI CTRYAG 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 3 cut(s) 45, 89, 375
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 243
TaqII GACCGA 1 cut(s) 387
TasI AATT 3 cut(s) 45, 89, 375
TfiI GAWTC 2 cut(s) 53, 438
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 346
TspRI CASTG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 244
XapI RAATTY 1 cut(s) 375
XceI RCATGY 2 cut(s) 216, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.