Rroxscaffold_3G00233000

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015764
Physical Location & Seq
Forward (+)
18790950 .. 18808504
17555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233000.1

Sequence Viewer

Length: 1116 bp
ATGGCGGTTTGTTGCTGCCGTAACATCATAGTCCTCTGCTACGGCTTCAATTCGCAACGATGGCGGTTTGTTGCTGCCGTAACATCACGGTCCTCCTGCTACAGCTTCAATTCTGCAACGATGGCGGTGTGTTGCTGCTTTGACATCACGGTCCTCCTGCACTCTCTTCAACAAGCATCCAGAGGCTCATCATGCTTGTGTTCCTTGTCTGCATACTCGTGCACGGAGCTGCATCAACTCGCTAGTTCGACTTGCTCTCTTGGCCGTCGGGTCCTCTCTCTCGCACTTGCTCCGGACTTCCTCCTTTTCGTTGAAATCAAGCACTCACTCACAAGGCCATCCTTGATTTCGAGTTTTAGTTGGACTCGGATGGTGAAGACAGCTTCGACAAGTGTCCATGGCGTCCCCAACCGTACCTCGGCTCGTCATCTATCCATTGCTTCGAATTGGGTAGTCTCTCCTTTCTTTGTTTGGTGGGTTTTTCCTTATTCCACACCAAACGTGATTTTGATGCTGGGAGGCCGAAGACCTCTCGTTGATGTGAAATCGAATGAAGGGTATGAAAACGAGATTTTGGTCCCAAGACAAGGATTGCTTCCCAAAATCAAGTGTAATGTGGGCTCGGTGTCATGGCCACAAGGAAGTGCGTCTGCTACCACGAAACCGTCAAATAACCACAATTTAAATTCCAGAAAATCCTCGGAAAATAAATACGAATTTACTGGGGCATCACAATTGTCTAATGAAGAAACGAGAGAAGGGGAGGCTTTGGAAGTGCGAAACAGAGAAACGGAGGCGGCGATGCGTAAGTCTTATGCCTCGAGCAAACGCCTTACTAAGGCTCTCCCAAAAACGCCTTGGCTACGTCTCGACCTTTTAAAACATTGGTCACTGTCGGTGGGACACCATGTATACAACTATAACCTACAAAATTACAAAGTAGATATGAGCAAAAACATCACCAAAGCTCAAGTCGCAACGAGACGTGGTATTTGGAGGCATATAAGTTACATAAGAAAAAGCTGTAGGTTATCTTTATATGCAGAAGTTGTAACGGGAAGCCGGTTTCCAAGTGATCCGGAAGCAAAATACGGACTTCTTATGAGTCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

371

Amino Acids

41.63

Weight (kDa)

9.64

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 912
AccIII TCCGGA 2 cut(s) 292, 1078
AciI CCGC 4 cut(s) 5, 64, 125, 797
AclWI GGATC 1 cut(s) 1070
AcoI YGGCCR 2 cut(s) 262, 632
AcsI RAATTY 2 cut(s) 685, 716
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 3 cut(s) 418, 587, 838
AgsI TTSAA 4 cut(s) 49, 109, 170, 314
AjiI CACGTC 1 cut(s) 986
AluBI AGCT 5 cut(s) 105, 229, 383, 968, 1023
AluI AGCT 5 cut(s) 105, 229, 383, 968, 1023
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 3 cut(s) 460, 872, 976
Alw44I GTGCAC 1 cut(s) 220
AlwI GGATC 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 820
Aor13HI TCCGGA 2 cut(s) 292, 1078
AoxI GGCC 4 cut(s) 262, 335, 520, 632
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 4 cut(s) 15, 74, 135, 229
ApoI RAATTY 2 cut(s) 685, 716
ArsI GACNNNNNNTTYG 4 cut(s) 957, 975, 989, 1007
AspS9I GGNCC 4 cut(s) 90, 151, 271, 577
AsuHPI GGTGA 2 cut(s) 385, 952
AsuII TTCGAA 1 cut(s) 443
AvaI CYCGRG 1 cut(s) 820
AvaII GGWCC 4 cut(s) 90, 151, 271, 577
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 634
BanII GRGCYC 1 cut(s) 623
BauI CACGAG 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 383, 532
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 4 cut(s) 2, 61, 122, 216
BccI CCATC 4 cut(s) 54, 115, 346, 364
BceAI ACGGC 4 cut(s) 3, 58, 62, 249
BcoDI GTCTC 3 cut(s) 460, 872, 976
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 100, 1024
BisI GCNGC 5 cut(s) 16, 75, 136, 230, 798
BlsI GCNGC 5 cut(s) 17, 76, 137, 231, 799
Bme18I GGWCC 4 cut(s) 90, 151, 271, 577
BmeT110I CYCGRG 1 cut(s) 820
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 90, 151, 271, 577
BmiI GGNNCC 2 cut(s) 272, 579
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 5 cut(s) 185, 241, 501, 737, 792
BmuI ACTGGG 1 cut(s) 732
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 383, 532
Bpu14I TTCGAA 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 4 cut(s) 397, 417, 699, 857
BsaWI WCCGGW 2 cut(s) 292, 1078
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 587, 838
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 1 cut(s) 727
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 2 cut(s) 292, 1078
BseDI CCNNGG 4 cut(s) 397, 417, 699, 857
BseGI GGATG 3 cut(s) 176, 338, 375
BseLI CCNNNNNNNGG 3 cut(s) 418, 587, 838
BseMI GCAATG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 727
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 4 cut(s) 2, 61, 122, 216
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 4 cut(s) 264, 337, 522, 634
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 3 cut(s) 293, 1063, 1079
BslFI GGGAC 3 cut(s) 389, 563, 915
BslI CCNNNNNNNGG 3 cut(s) 418, 587, 838
BsmAI GTCTC 3 cut(s) 460, 872, 976
BsmBI CGTCTC 2 cut(s) 872, 976
BsmFI GGGAC 3 cut(s) 389, 563, 915
BsnI GGCC 4 cut(s) 264, 337, 522, 634
BsoBI CYCGRG 1 cut(s) 820
Bsp119I TTCGAA 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 224, 623
Bsp13I TCCGGA 2 cut(s) 292, 1078
Bsp143I GATC 1 cut(s) 1075
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 4 cut(s) 5, 64, 125, 797
BspANI GGCC 4 cut(s) 264, 337, 522, 634
BspEI TCCGGA 2 cut(s) 292, 1078
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 2 cut(s) 272, 579
BspPI GGATC 1 cut(s) 1070
BspT104I TTCGAA 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 1062
BsrI ACTGG 1 cut(s) 727
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 4 cut(s) 397, 417, 699, 857
BssMI GATC 1 cut(s) 1075
BssNAI GTATAC 1 cut(s) 913
BssNI GRCGYC 1 cut(s) 402
BssSI CACGAG 1 cut(s) 217
BssT1I CCWWGG 2 cut(s) 397, 857
Bst1107I GTATAC 1 cut(s) 913
Bst2BI CACGAG 1 cut(s) 217
Bst4CI ACNGT 5 cut(s) 90, 151, 413, 666, 894
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 837
BstDSI CCRYGG 1 cut(s) 397
BstENI CCTNNNNNAGG 1 cut(s) 836
BstF5I GGATG 3 cut(s) 176, 338, 375
BstKTI GATC 1 cut(s) 1078
BstMAI GTCTC 3 cut(s) 460, 872, 976
BstMBI GATC 1 cut(s) 1075
BstMWI GCNNNNNNNGC 5 cut(s) 61, 122, 192, 261, 974
BstPAI GACNNNNGTC 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 100, 1024
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 2, 61, 122, 216
BstV2I GAAGAC 2 cut(s) 383, 532
BstZ17I GTATAC 1 cut(s) 913
BsuRI GGCC 4 cut(s) 264, 337, 522, 634
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 815
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 3 cut(s) 176, 338, 375
BtsIMutI CAGTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 1108
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 4 cut(s) 90, 151, 271, 577
CseI GACGC 2 cut(s) 391, 636
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 192, 398, 630, 908, 1109
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 837
DpnI GATC 1 cut(s) 1077
DpnII GATC 1 cut(s) 1075
DraI TTTAAA 2 cut(s) 684, 879
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 262, 632
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 397, 857
Eco24I GRGCYC 1 cut(s) 623
Eco47I GGWCC 4 cut(s) 90, 151, 271, 577
Eco88I CYCGRG 1 cut(s) 820
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 397, 857
EcoT38I GRGCYC 1 cut(s) 623
ErhI CCWWGG 2 cut(s) 397, 857
Esp3I CGTCTC 2 cut(s) 872, 976
FaeI CATG 5 cut(s) 195, 401, 633, 911, 1112
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 3 cut(s) 389, 563, 915
FatI CATG 5 cut(s) 191, 397, 629, 907, 1108
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 5 cut(s) 16, 75, 136, 230, 798
FokI GGATG 3 cut(s) 163, 325, 382
FriOI GRGCYC 1 cut(s) 623
Fsp4HI GCNGC 5 cut(s) 16, 75, 136, 230, 798
FspBI CTAG 1 cut(s) 243
GluI GCNGC 5 cut(s) 16, 75, 136, 230, 798
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 4 cut(s) 264, 337, 522, 634
HapII CCGG 3 cut(s) 293, 1063, 1079
HgaI GACGC 2 cut(s) 391, 636
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 5 cut(s) 195, 401, 633, 911, 1112
HinfI GANTC 2 cut(s) 364, 1105
HpaII CCGG 3 cut(s) 293, 1063, 1079
HphI GGTGA 2 cut(s) 385, 952
Hpy166II GTNNAC 2 cut(s) 222, 913
Hpy188I TCNGA 2 cut(s) 369, 703
Hpy188III TCNNGA 6 cut(s) 180, 293, 690, 869, 1079, 1109
Hpy8I GTNNAC 2 cut(s) 222, 913
Hpy99I CGWCG 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 548, 752
HpyCH4III ACNGT 5 cut(s) 90, 151, 413, 666, 894
HpyCH4IV ACGT 3 cut(s) 501, 865, 985
HpyCH4V TGCA 6 cut(s) 116, 160, 212, 222, 232, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 122, 192, 261, 974
HpyF3I CTNAG 1 cut(s) 837
HpySE526I ACGT 3 cut(s) 501, 865, 985
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 5 cut(s) 195, 401, 633, 911, 1112
Kpn2I TCCGGA 2 cut(s) 292, 1078
Kzo9I GATC 1 cut(s) 1075
LmnI GCTCC 2 cut(s) 226, 295
LpnPI CCDG 9 cut(s) 109, 170, 193, 306, 500, 703, 708, 1076, 1092
Lsp1109I GCAGC 4 cut(s) 2, 61, 122, 216
LweI GCATC 5 cut(s) 185, 241, 501, 737, 792
MaeI CTAG 1 cut(s) 243
MaeII ACGT 3 cut(s) 501, 865, 985
MaeIII GTNAC 5 cut(s) 20, 79, 888, 1007, 1051
MalI GATC 1 cut(s) 1077
MboI GATC 1 cut(s) 1075
MboII GAAGA 4 cut(s) 158, 388, 537, 758
MfeI CAATTG 1 cut(s) 734
MhlI GDGCHC 2 cut(s) 224, 623
MlsI TGGCCA 1 cut(s) 634
MluCI AATT 8 cut(s) 49, 109, 445, 679, 685, 716, 734, 931
MluNI TGGCCA 1 cut(s) 634
MlyI GAGTC 2 cut(s) 358, 1114
MmeI TCCRAC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 634
MroI TCCGGA 2 cut(s) 292, 1078
MscI TGGCCA 1 cut(s) 634
MseI TTAA 2 cut(s) 683, 878
MslI CAYNNNNRTG 2 cut(s) 196, 217
Msp20I TGGCCA 1 cut(s) 634
MspI CCGG 3 cut(s) 293, 1063, 1079
MunI CAATTG 1 cut(s) 734
MwoI GCNNNNNNNGC 5 cut(s) 61, 122, 192, 261, 974
NcoI CCATGG 1 cut(s) 397
NdeII GATC 1 cut(s) 1075
NlaIII CATG 5 cut(s) 195, 401, 633, 911, 1112
NlaIV GGNNCC 2 cut(s) 272, 579
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 888
NspV TTCGAA 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 820
PagI TCATGA 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PkrI GCNGC 5 cut(s) 17, 76, 137, 231, 799
PleI GAGTC 2 cut(s) 358, 1113
PpsI GAGTC 2 cut(s) 358, 1113
PpuMI RGGWCCY 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 272, 579
PspPI GGNCC 4 cut(s) 90, 151, 271, 577
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 820
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 2 cut(s) 196, 217
SaqAI TTAA 2 cut(s) 683, 878
SatI GCNGC 5 cut(s) 16, 75, 136, 230, 798
Sau3AI GATC 1 cut(s) 1075
Sau96I GGNCC 4 cut(s) 90, 151, 271, 577
SchI GAGTC 2 cut(s) 358, 1114
SduI GDGCHC 2 cut(s) 224, 623
SfaNI GCATC 5 cut(s) 185, 241, 501, 737, 792
SfcI CTRYAG 2 cut(s) 100, 1024
Sfr274I CTCGAG 1 cut(s) 820
SfuI TTCGAA 1 cut(s) 443
SinI GGWCC 4 cut(s) 90, 151, 271, 577
SlaI CTCGAG 1 cut(s) 820
SmiI ATTTAAAT 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 196, 217
SmlI CTYRAG 2 cut(s) 820, 969
SmoI CTYRAG 2 cut(s) 820, 969
Sse9I AATT 8 cut(s) 49, 109, 445, 679, 685, 716, 734, 931
SsiI CCGC 4 cut(s) 5, 64, 125, 797
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 397, 857
SwaI ATTTAAAT 1 cut(s) 684
TaaI ACNGT 5 cut(s) 90, 151, 413, 666, 894
TaiI ACGT 3 cut(s) 504, 868, 988
TaqI TCGA 7 cut(s) 248, 350, 386, 443, 548, 821, 870
TasI AATT 8 cut(s) 49, 109, 445, 679, 685, 716, 734, 931
TauI GCSGC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 683, 878
Tru9I TTAA 2 cut(s) 683, 878
TscAI CASTG 1 cut(s) 897
TseFI GTSAC 1 cut(s) 888
TseI GCWGC 4 cut(s) 15, 74, 135, 229
Tsp45I GTSAC 1 cut(s) 888
TspDTI ATGAA 3 cut(s) 567, 576, 759
TspGWI ACGGA 3 cut(s) 239, 806, 1107
TspRI CASTG 1 cut(s) 897
VneI GTGCAC 1 cut(s) 220
VpaK11BI GGWCC 4 cut(s) 90, 151, 271, 577
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 2 cut(s) 685, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 912
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.