Rroxscaffold_7G00191060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015764
Physical Location & Seq
Reverse (-)
31559393 .. 31568946
9554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191060.1

Sequence Viewer

Length: 468 bp
ATGTCTAGGCAGGAATTTGTTGCTTCCTTTAGAAGGATCGGAACTTGTTGGCGAGAGAATGTGACCGTGTGGACCACCGAGCTCGGTCACCACTATTTTTTCAGGCCACTTATTTTGGAAAAATTAACAGAAGTACCAAAGTGTCAAATAGAGTCTAACTTCAGTACCAAACTGTCCCCTTTAATACATCGGGTATCAAACTGTCCAAGTAGCAATACCTCAGGAATCTCGGCGGATGAACTAAGGAGGCTGGTGGAGGTAGATAAGCTTATTGCTAGGAAAGCTTACCCGTGCGAGATCCTTTCCACTCATTCCTCAACCAAACAAGAAGACCAAGGCTACGGAATCAAAGGCGGGGATGATGAGAGGATGCGAGGCCTTGAGTCGTTTCACCTCGTGAAAGGCTTTCTCAAGACAGATGAATTTGGAGCCGTAGGTGGGTTGGAAGACTTGAAGGTTGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.6

Weight (kDa)

7.71

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 354
AclWI GGATC 2 cut(s) 44, 292
AcsI RAATTY 2 cut(s) 14, 422
AcuI CTGAAG 1 cut(s) 145
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 2 cut(s) 135, 166
AfiI CCNNNNNNNGG 2 cut(s) 33, 438
AgsI TTSAA 1 cut(s) 454
AluBI AGCT 3 cut(s) 82, 268, 284
AluI AGCT 3 cut(s) 82, 268, 284
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 2 cut(s) 44, 292
AoxI GGCC 2 cut(s) 104, 376
ApoI RAATTY 2 cut(s) 14, 422
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 80, 383
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 220
BaeI ACNNNNGTAYC 4 cut(s) 117, 148, 150, 181
BanII GRGCYC 1 cut(s) 84
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 336, 453
Bbv12I GWGCWC 1 cut(s) 84
BceAI ACGGC 1 cut(s) 416
BfaI CTAG 2 cut(s) 6, 276
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 336, 453
BpuEI CTTGAG 2 cut(s) 395, 401
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 438
Bse21I CCTNAGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 3 cut(s) 241, 364, 375
BseLI CCNNNNNNNGG 2 cut(s) 33, 438
BseMII CTCAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 106, 378
BsiHKAI GWGCWC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 33, 438
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 106, 378
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 36, 297
BspACI CCGC 2 cut(s) 233, 354
BspANI GGCC 2 cut(s) 106, 378
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 430
BspPI GGATC 2 cut(s) 44, 292
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 2 cut(s) 36, 297
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 395
Bst4CI ACNGT 3 cut(s) 67, 174, 203
BstDEI CTNAG 2 cut(s) 220, 242
BstEII GGTNACC 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 241, 364, 375
BstKTI GATC 2 cut(s) 39, 300
BstMBI GATC 2 cut(s) 36, 297
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstPI GGTNACC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 336, 453
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 2 cut(s) 106, 378
BtsCI GGATG 3 cut(s) 241, 364, 375
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 134, 165
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviJI RGCY 9 cut(s) 82, 106, 250, 268, 284, 339, 378, 405, 431
CviKI_1 RGCY 9 cut(s) 82, 106, 250, 268, 284, 339, 378, 405, 431
CviQI GTAC 2 cut(s) 134, 165
DdeI CTNAG 2 cut(s) 220, 242
DpnI GATC 2 cut(s) 38, 299
DpnII GATC 2 cut(s) 36, 297
DraIII CACNNNGTG 1 cut(s) 397
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 334
FaqI GGGAC 1 cut(s) 160
FauI CCCGC 1 cut(s) 347
FokI GGATG 3 cut(s) 248, 371, 382
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 6, 276
HaeIII GGCC 2 cut(s) 106, 378
HindIII AAGCTT 2 cut(s) 266, 282
HinfI GANTC 4 cut(s) 152, 225, 345, 383
HphI GGTGA 2 cut(s) 80, 383
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 222, 397, 412
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 27, 448
HpyCH4III ACNGT 3 cut(s) 67, 174, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 220, 242
Kzo9I GATC 2 cut(s) 36, 297
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 3 cut(s) 88, 207, 236
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 6, 276
MaeIII GTNAC 2 cut(s) 61, 86
MalI GATC 2 cut(s) 38, 299
MboI GATC 2 cut(s) 36, 297
MboII GAAGA 2 cut(s) 341, 458
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 14, 122, 422
MlyI GAGTC 2 cut(s) 161, 392
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 7 cut(s) 229, 240, 250, 325, 360, 368, 404
MseI TTAA 2 cut(s) 125, 182
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 2 cut(s) 36, 297
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 61, 86
PceI AGGCCT 1 cut(s) 378
PfeI GAWTC 2 cut(s) 225, 345
PleI GAGTC 2 cut(s) 160, 391
PpsI GAGTC 2 cut(s) 160, 391
Psp124BI GAGCTC 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 135, 166
RsaNI GTAC 2 cut(s) 134, 165
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 125, 182
Sau3AI GATC 2 cut(s) 36, 297
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 161, 392
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 84, 221, 261, 270, 286, 396, 439, 459
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 380, 410
SmoI CTYRAG 2 cut(s) 380, 410
Sse9I AATT 3 cut(s) 14, 122, 422
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 2 cut(s) 233, 354
SspMI CTAG 2 cut(s) 6, 276
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 378
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 67, 174, 203
TaqII GACCGA 1 cut(s) 74
TasI AATT 3 cut(s) 14, 122, 422
TfiI GAWTC 2 cut(s) 225, 345
Tru1I TTAA 2 cut(s) 125, 182
Tru9I TTAA 2 cut(s) 125, 182
TseFI GTSAC 2 cut(s) 61, 86
Tsp45I GTSAC 2 cut(s) 61, 86
TspDTI ATGAA 2 cut(s) 252, 435
TspGWI ACGGA 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 31
XapI RAATTY 2 cut(s) 14, 422
XspI CTAG 2 cut(s) 6, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.